Click here to switch to the map view.

The map label for this gene is nreC [H]

Identifier: 159900854

GI number: 159900854

Start: 5549383

End: 5550414

Strand: Direct

Name: nreC [H]

Synonym: Haur_4341

Alternate gene names: 159900854

Gene position: 5549383-5550414 (Clockwise)

Preceding gene: 159900849

Following gene: 159900866

Centisome position: 87.44

GC content: 52.91

Gene sequence:

>1032_bases
ATGCAACTCAATGGCGAGCGTCAGATTCGAATTGTGGTAGCCGATGATCATGCGGTAGTGCGAGCTGGCATTTCAACCGC
ACTAAGCGATTTGCCCAATGTTGAAATTGTGGCCGAGGTCGGCGATGGGCCTGGGGTTTTAGCCGCGCTCGATCTACGGC
CAGATGCCTTGGTGATTGATGTGAGCATGCCGCAATTCGAGCCGTTGCAAACAATTCGCCAAATTCGCATGCATTATCCA
CAGCTCAAAATTCTCGTAGTCAGCGCCTATGATGATGATGTGTATGTGCAAGGGTTGTTGCAAGCAGGAGTCGATGGCTA
CCAACTCAAAGATCAACCTTTGGCTGATATTCGTTTGGCCCTGCAACGGGTGCTAGCTGGCGAACGCTGGGTTTGCACAC
CCTTGCTTTCGAAGTTGATGCGTGGCGTGCCCGTGGTTGAAACTGGCCTGACCCCGCGCCAACGTGAATTGTTGTGGTGT
TTGCAGCAGGGCGATGATAACCATGCAATTGCCCGCCGCATTGGCCTAAGCGTCAAAACCGTTGAAAATCATCTTACGCG
GCTGTATCGCCAAATTGGGGTGCAAAGTCGGCTTGAAGCGGTACATTATGCGGCCCAACACCCACAATTGCCGATGATGC
CAACCAGCAACCAAGTGATTGCCCCCAGCCAAGCGCTAAGCGTGTTGATTGTTGATGATAATTTGCGCTATCGTCAACAC
GTTAGTCGCATGATTAGCAAAATGCAGCCCAATTGTGCTGTGGTTGAAGCCGCTCACCAAACTGAAGCTATGGCAGCAAT
TAGCCAACGCTCGCCTGATTTGGCCTTGGTTGATGTGGTTTTAGGCGATGAAGATGGCATTAGTTGCGCCGCCCAAATTA
AGCAACAATCGCCCAAGACCCGCGTGCTGCTGGTCAGCGCCTACCCCGACCGCGAGTTTCATCGGCGCGGTTTGGCGGTC
GGGGCAGTTGCCTTGCTCGATAAAAAAGACCTTGATGCGGCGGCGCTGCGCTTGTTGTTGGAAGATGTGTGA

Upstream 100 bases:

>100_bases
ACGCCAAAGCTGTTGGTCAACCCAACCCCCAATCCCCCAATCTTCCTAGGGTCTTTCCCCTAGTTGAATGGGGGGATTTC
CCCCTAAAGCGAGGATTTGC

Downstream 100 bases:

>100_bases
GTGAGGGGTCAGTTGTCGGGGGCTAGGGGTCAGGATTGTGATCCACGAAGGACACGAAGAACACAAAGAAGGTTTTTAGC
CACAGATGAGCACAGATTAT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Nitrogen regulation protein C [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MQLNGERQIRIVVADDHAVVRAGISTALSDLPNVEIVAEVGDGPGVLAALDLRPDALVIDVSMPQFEPLQTIRQIRMHYP
QLKILVVSAYDDDVYVQGLLQAGVDGYQLKDQPLADIRLALQRVLAGERWVCTPLLSKLMRGVPVVETGLTPRQRELLWC
LQQGDDNHAIARRIGLSVKTVENHLTRLYRQIGVQSRLEAVHYAAQHPQLPMMPTSNQVIAPSQALSVLIVDDNLRYRQH
VSRMISKMQPNCAVVEAAHQTEAMAAISQRSPDLALVDVVLGDEDGISCAAQIKQQSPKTRVLLVSAYPDREFHRRGLAV
GAVALLDKKDLDAAALRLLLEDV

Sequences:

>Translated_343_residues
MQLNGERQIRIVVADDHAVVRAGISTALSDLPNVEIVAEVGDGPGVLAALDLRPDALVIDVSMPQFEPLQTIRQIRMHYP
QLKILVVSAYDDDVYVQGLLQAGVDGYQLKDQPLADIRLALQRVLAGERWVCTPLLSKLMRGVPVVETGLTPRQRELLWC
LQQGDDNHAIARRIGLSVKTVENHLTRLYRQIGVQSRLEAVHYAAQHPQLPMMPTSNQVIAPSQALSVLIVDDNLRYRQH
VSRMISKMQPNCAVVEAAHQTEAMAAISQRSPDLALVDVVLGDEDGISCAAQIKQQSPKTRVLLVSAYPDREFHRRGLAV
GAVALLDKKDLDAAALRLLLEDV
>Mature_343_residues
MQLNGERQIRIVVADDHAVVRAGISTALSDLPNVEIVAEVGDGPGVLAALDLRPDALVIDVSMPQFEPLQTIRQIRMHYP
QLKILVVSAYDDDVYVQGLLQAGVDGYQLKDQPLADIRLALQRVLAGERWVCTPLLSKLMRGVPVVETGLTPRQRELLWC
LQQGDDNHAIARRIGLSVKTVENHLTRLYRQIGVQSRLEAVHYAAQHPQLPMMPTSNQVIAPSQALSVLIVDDNLRYRQH
VSRMISKMQPNCAVVEAAHQTEAMAAISQRSPDLALVDVVLGDEDGISCAAQIKQQSPKTRVLLVSAYPDREFHRRGLAV
GAVALLDKKDLDAAALRLLLEDV

Specific function: Member of the two-component regulatory system nreB/nreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. Phosphorylated nreC binds to a GC-rich palindromic sequence at the promoters of the nitrate (narGHJI) and nit

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787473, Length=205, Percent_Identity=31.7073170731707, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788222, Length=208, Percent_Identity=23.5576923076923, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788521, Length=207, Percent_Identity=31.4009661835749, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786747, Length=199, Percent_Identity=26.1306532663317, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788546, Length=205, Percent_Identity=25.3658536585366, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790102, Length=193, Percent_Identity=30.5699481865285, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788712, Length=204, Percent_Identity=25.4901960784314, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 37812; Mature: 37812

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNGERQIRIVVADDHAVVRAGISTALSDLPNVEIVAEVGDGPGVLAALDLRPDALVID
CCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
VSMPQFEPLQTIRQIRMHYPQLKILVVSAYDDDVYVQGLLQAGVDGYQLKDQPLADIRLA
ECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEECCCCHHHHHHH
LQRVLAGERWVCTPLLSKLMRGVPVVETGLTPRQRELLWCLQQGDDNHAIARRIGLSVKT
HHHHHCCCCEEHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHH
VENHLTRLYRQIGVQSRLEAVHYAAQHPQLPMMPTSNQVIAPSQALSVLIVDDNLRYRQH
HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEEEEEECCCHHHHH
VSRMISKMQPNCAVVEAAHQTEAMAAISQRSPDLALVDVVLGDEDGISCAAQIKQQSPKT
HHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCE
RVLLVSAYPDREFHRRGLAVGAVALLDKKDLDAAALRLLLEDV
EEEEEEECCCHHHHHCCHHHHHHEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MQLNGERQIRIVVADDHAVVRAGISTALSDLPNVEIVAEVGDGPGVLAALDLRPDALVID
CCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
VSMPQFEPLQTIRQIRMHYPQLKILVVSAYDDDVYVQGLLQAGVDGYQLKDQPLADIRLA
ECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEECCCCHHHHHHH
LQRVLAGERWVCTPLLSKLMRGVPVVETGLTPRQRELLWCLQQGDDNHAIARRIGLSVKT
HHHHHCCCCEEHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHH
VENHLTRLYRQIGVQSRLEAVHYAAQHPQLPMMPTSNQVIAPSQALSVLIVDDNLRYRQH
HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEEEEEECCCHHHHH
VSRMISKMQPNCAVVEAAHQTEAMAAISQRSPDLALVDVVLGDEDGISCAAQIKQQSPKT
HHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCE
RVLLVSAYPDREFHRRGLAVGAVALLDKKDLDAAALRLLLEDV
EEEEEEECCCHHHHHCCHHHHHHEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA