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The map label for this gene is xylH [H]

Identifier: 159900851

GI number: 159900851

Start: 5545782

End: 5547017

Strand: Reverse

Name: xylH [H]

Synonym: Haur_4338

Alternate gene names: 159900851

Gene position: 5547017-5545782 (Counterclockwise)

Preceding gene: 159900852

Following gene: 159900850

Centisome position: 87.4

GC content: 52.1

Gene sequence:

>1236_bases
ATGATGAAAACGCAACCGACGAATCTTGCTGCTGCGCCCAACAATTGGCGCGAAGCATTAGCCGAACGCTTTCGCCAAGG
CAACCTAGGCTCGCTGCCAGTGATTATTGGCTTGATTATTATTGCATTGGTGTTTCAAAGTATCAATAAAAACTTTCTTA
CGCCGCTCAACCTGACCAACTTGATGGTGCAAATCGCCGCGATGGGCACAATTTCAACGGGAGTTGTGCTAATTTTGCTG
CTAGGTGAGGTTGATCTTTCGGCAGGCCAGGTTAGTGGCTTGGCGGCGGCGGTGATGGCGGTGTTGGTTTCGCGCCATAA
TTTGCCTGCTGCCGTGGCGATTATTGGGGCAATTGTGGTTGGAGCCTTGGTTGGCTTGTTGCAAGGTTGGTGGATTTCAA
CCTTCCGCGTGCCCTCGTTTGTGGTTACGCTTGCAGGTTTGCTAGCTTGGCAAGGCTCGCGATTACGAGTGCTTGGTGAC
ACAGGCAGCATCAACATCACCAATAAATTTATTAATGATATTGCCAACTATAAACTGCCAATTTGGCTTGGCTGGGTTTT
GGGGATTGTCAGTGTTGTCGTTTATACCTTGATTGTGTTCAACGAATATCGCAGCCGCCGCGCTGCTGAATTGCCAACTG
GCTCGTTGAACGGCGTATTTTGGCGGGTTGGGGTGGTTGGCGCGAGTGTCTTGGCGGGTGTTGCGATGATGAGCGTCAAC
CGCAATGCCAACGCTGCGGGTAACCCAATCCAAGGCGTGCCTAGCGCAGTCATTATCTTCCTAACGTTTTTGATTATCTT
TGATTTTATTACCCAGCGCACCCGTTTTGGCCGCTATGTTTATGCGGTTGGCGGCAATACCGAAGCTGCTCGCCGCGCAG
GAATCAATGTTAATCGGATTCGGATTACGATTTTTATGCTGGCTTCGGCACTCGCCGCCTGTGGCGGGATTTTGGCCGCC
TCACGTTTGAACGCGGCCAATCAATCATCAGGCGATGGCGACGTGCTTTTGAACGCAATCGCCGCAGCGGTGATCGGTGG
CACCAGCCTGTTTGGTGGGCGTGGCCGAATTTGGTCGGCTTTGCTGGGCGCACTAGTGATTGGGGCAATTGCCAATGGCA
TGGATTTACTGGCGCTCAAGTCATCGATCAAATTTATCGTAACTGGCTCAGTGCTTTTGTTGGCAGTCACGATTGATGCC
GCCTCACGCGCCCGCCGCGAAAACAGTGGACGTTAG

Upstream 100 bases:

>100_bases
GGCGGGTCGCTACCTTCCACACCGCTCGCAGCACCAACGAACAAGTGATTGGCGCGATTACTGGGGCAATGCTGCCCAGC
AATGCCTATGGAGAGGCCGA

Downstream 100 bases:

>100_bases
ATCCAAAATTATTTATTAGAAGTAAATTTGTTTCGCCACCCTTCCGTCCCTCCGCTGGAGGGAAACGCCGGGGGTTTTCA
TCCCCCGGCACCCCCTAAAT

Product: inner-membrane translocator

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MMKTQPTNLAAAPNNWREALAERFRQGNLGSLPVIIGLIIIALVFQSINKNFLTPLNLTNLMVQIAAMGTISTGVVLILL
LGEVDLSAGQVSGLAAAVMAVLVSRHNLPAAVAIIGAIVVGALVGLLQGWWISTFRVPSFVVTLAGLLAWQGSRLRVLGD
TGSINITNKFINDIANYKLPIWLGWVLGIVSVVVYTLIVFNEYRSRRAAELPTGSLNGVFWRVGVVGASVLAGVAMMSVN
RNANAAGNPIQGVPSAVIIFLTFLIIFDFITQRTRFGRYVYAVGGNTEAARRAGINVNRIRITIFMLASALAACGGILAA
SRLNAANQSSGDGDVLLNAIAAAVIGGTSLFGGRGRIWSALLGALVIGAIANGMDLLALKSSIKFIVTGSVLLLAVTIDA
ASRARRENSGR

Sequences:

>Translated_411_residues
MMKTQPTNLAAAPNNWREALAERFRQGNLGSLPVIIGLIIIALVFQSINKNFLTPLNLTNLMVQIAAMGTISTGVVLILL
LGEVDLSAGQVSGLAAAVMAVLVSRHNLPAAVAIIGAIVVGALVGLLQGWWISTFRVPSFVVTLAGLLAWQGSRLRVLGD
TGSINITNKFINDIANYKLPIWLGWVLGIVSVVVYTLIVFNEYRSRRAAELPTGSLNGVFWRVGVVGASVLAGVAMMSVN
RNANAAGNPIQGVPSAVIIFLTFLIIFDFITQRTRFGRYVYAVGGNTEAARRAGINVNRIRITIFMLASALAACGGILAA
SRLNAANQSSGDGDVLLNAIAAAVIGGTSLFGGRGRIWSALLGALVIGAIANGMDLLALKSSIKFIVTGSVLLLAVTIDA
ASRARRENSGR
>Mature_411_residues
MMKTQPTNLAAAPNNWREALAERFRQGNLGSLPVIIGLIIIALVFQSINKNFLTPLNLTNLMVQIAAMGTISTGVVLILL
LGEVDLSAGQVSGLAAAVMAVLVSRHNLPAAVAIIGAIVVGALVGLLQGWWISTFRVPSFVVTLAGLLAWQGSRLRVLGD
TGSINITNKFINDIANYKLPIWLGWVLGIVSVVVYTLIVFNEYRSRRAAELPTGSLNGVFWRVGVVGASVLAGVAMMSVN
RNANAAGNPIQGVPSAVIIFLTFLIIFDFITQRTRFGRYVYAVGGNTEAARRAGINVNRIRITIFMLASALAACGGILAA
SRLNAANQSSGDGDVLLNAIAAAVIGGTSLFGGRGRIWSALLGALVIGAIANGMDLLALKSSIKFIVTGSVLLLAVTIDA
ASRARRENSGR

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=379, Percent_Identity=33.7730870712401, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1790191, Length=153, Percent_Identity=45.7516339869281, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1788896, Length=165, Percent_Identity=43.030303030303, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1790524, Length=148, Percent_Identity=39.8648648648649, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693152, Length=156, Percent_Identity=39.1025641025641, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082395, Length=125, Percent_Identity=38.4, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787794, Length=158, Percent_Identity=26.5822784810127, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 43172; Mature: 43172

Theoretical pI: Translated: 11.83; Mature: 11.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKTQPTNLAAAPNNWREALAERFRQGNLGSLPVIIGLIIIALVFQSINKNFLTPLNLTN
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LMVQIAAMGTISTGVVLILLLGEVDLSAGQVSGLAAAVMAVLVSRHNLPAAVAIIGAIVV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GALVGLLQGWWISTFRVPSFVVTLAGLLAWQGSRLRVLGDTGSINITNKFINDIANYKLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHCCCCH
IWLGWVLGIVSVVVYTLIVFNEYRSRRAAELPTGSLNGVFWRVGVVGASVLAGVAMMSVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
RNANAAGNPIQGVPSAVIIFLTFLIIFDFITQRTRFGRYVYAVGGNTEAARRAGINVNRI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHH
RITIFMLASALAACGGILAASRLNAANQSSGDGDVLLNAIAAAVIGGTSLFGGRGRIWSA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LLGALVIGAIANGMDLLALKSSIKFIVTGSVLLLAVTIDAASRARRENSGR
HHHHHHHHHHHCCHHHHHHHHCCCEEEECCEEEEEEEHHHHHHHHHCCCCC
>Mature Secondary Structure
MMKTQPTNLAAAPNNWREALAERFRQGNLGSLPVIIGLIIIALVFQSINKNFLTPLNLTN
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LMVQIAAMGTISTGVVLILLLGEVDLSAGQVSGLAAAVMAVLVSRHNLPAAVAIIGAIVV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GALVGLLQGWWISTFRVPSFVVTLAGLLAWQGSRLRVLGDTGSINITNKFINDIANYKLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHCCCCH
IWLGWVLGIVSVVVYTLIVFNEYRSRRAAELPTGSLNGVFWRVGVVGASVLAGVAMMSVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
RNANAAGNPIQGVPSAVIIFLTFLIIFDFITQRTRFGRYVYAVGGNTEAARRAGINVNRI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHH
RITIFMLASALAACGGILAASRLNAANQSSGDGDVLLNAIAAAVIGGTSLFGGRGRIWSA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LLGALVIGAIANGMDLLALKSSIKFIVTGSVLLLAVTIDAASRARRENSGR
HHHHHHHHHHHCCHHHHHHHHCCCEEEECCEEEEEEEHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]