| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900846
Identifier: 159900846
GI number: 159900846
Start: 5533293
End: 5534018
Strand: Reverse
Name: 159900846
Synonym: Haur_4333
Alternate gene names: NA
Gene position: 5534018-5533293 (Counterclockwise)
Preceding gene: 159900847
Following gene: 159900845
Centisome position: 87.2
GC content: 50.96
Gene sequence:
>726_bases ATGGCCAACACAACCATCACTTGGCTTGGTCACGCCAGCTTTTTATTTGTCACGCCCGAAGGCAAACGGATTGTGCTTGA CCCTTGGTACGAGGGCAATCCTAGTTTTCCTGAGTCTGCCAAAGCCGAACTCGAACATGTCGATGCAATTTTGCTCACTC ACGGCCATATGGATCATACTGGTAACGCTATCACGCTGGCGCAGCAAACCAAAGCACCGGTCGCTGGCATTGTCGAACTG ATTGGCTGGGTGCAAGGCCAAGGTGTCGATGCGACACAATGTATTGGCTTCAACAAAGGTGGTTGTATCGAGCTTGCTGG CATCAAAGCAACCTTAACTACAGCGCACCACAGCAGCAGTATCTCCAGCGGCAGTATTTCGCTCTACTTGGGCGATCCTT GTGGCTTTATCCTCGAATTTTCCGATGGCTGCGTGGTGTATCACACTGGCGATACCTGTGTTCACGGCGATATGGCTCTG ATGGGCGAGATTTATCAGCCGAATGTGACCATTTTGCCAATTGGCGATTTTTATACTATGGGGCCACGCCAAGCCGCGCA TGCACTCAAATTAATTGGCTCCAAATTTGCTATCCCAGAACACTATGGCACATTCCCAGCCTTGCATGGCAACCCCGAGG CGTTGCAGAGCGAATTAAACAAACTTCAGCTCAACACCGCAATCGTTGCGTTGCAACCTGGCGAAGCTTGGACTTACCCA GCCTAA
Upstream 100 bases:
>100_bases CTACAATTATCCTGCGCCCTTAGAAACCCTGCCGTTGTTCGAGCGGCTGTGGTAGAATTTTAGCGAGTAGTTGTATTTTG GTGTGCAAGGAGATTATTTC
Downstream 100 bases:
>100_bases ATGTTTCCCGTGAAACATTTAGCAGTTTGATTAGACAGCGTACTCTTATGCAAGGGTACGCTGTTCTTTTTGGGCAATGC TTGGCCTAACTTGTGAAACA
Product: beta-lactamase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MANTTITWLGHASFLFVTPEGKRIVLDPWYEGNPSFPESAKAELEHVDAILLTHGHMDHTGNAITLAQQTKAPVAGIVEL IGWVQGQGVDATQCIGFNKGGCIELAGIKATLTTAHHSSSISSGSISLYLGDPCGFILEFSDGCVVYHTGDTCVHGDMAL MGEIYQPNVTILPIGDFYTMGPRQAAHALKLIGSKFAIPEHYGTFPALHGNPEALQSELNKLQLNTAIVALQPGEAWTYP A
Sequences:
>Translated_241_residues MANTTITWLGHASFLFVTPEGKRIVLDPWYEGNPSFPESAKAELEHVDAILLTHGHMDHTGNAITLAQQTKAPVAGIVEL IGWVQGQGVDATQCIGFNKGGCIELAGIKATLTTAHHSSSISSGSISLYLGDPCGFILEFSDGCVVYHTGDTCVHGDMAL MGEIYQPNVTILPIGDFYTMGPRQAAHALKLIGSKFAIPEHYGTFPALHGNPEALQSELNKLQLNTAIVALQPGEAWTYP A >Mature_240_residues ANTTITWLGHASFLFVTPEGKRIVLDPWYEGNPSFPESAKAELEHVDAILLTHGHMDHTGNAITLAQQTKAPVAGIVELI GWVQGQGVDATQCIGFNKGGCIELAGIKATLTTAHHSSSISSGSISLYLGDPCGFILEFSDGCVVYHTGDTCVHGDMALM GEIYQPNVTILPIGDFYTMGPRQAAHALKLIGSKFAIPEHYGTFPALHGNPEALQSELNKLQLNTAIVALQPGEAWTYPA
Specific function: Unknown
COG id: COG2220
COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0173 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4333_HERA2 (A9AY83)
Other databases:
- EMBL: CP000875 - RefSeq: YP_001547093.1 - ProteinModelPortal: A9AY83 - GeneID: 5736193 - GenomeReviews: CP000875_GR - KEGG: hau:Haur_4333 - HOGENOM: HBG741314 - OMA: FPIIDQT - BioCyc: HAUR316274:HAUR_4333-MONOMER - HAMAP: MF_00457 - InterPro: IPR001279 - InterPro: IPR022877 - SMART: SM00849
Pfam domain/function: PF00753 Lactamase_B
EC number: NA
Molecular weight: Translated: 25725; Mature: 25593
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANTTITWLGHASFLFVTPEGKRIVLDPWYEGNPSFPESAKAELEHVDAILLTHGHMDHT CCCCEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHEEEEEECCCCCCC GNAITLAQQTKAPVAGIVELIGWVQGQGVDATQCIGFNKGGCIELAGIKATLTTAHHSSS CCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHEECCCCCCEEEEECCEEEEEECCCCCC ISSGSISLYLGDPCGFILEFSDGCVVYHTGDTCVHGDMALMGEIYQPNVTILPIGDFYTM CCCCEEEEEECCCCCEEEEECCCEEEEECCCCEEECCHHEECCEECCCEEEEECCCCEEC GPRQAAHALKLIGSKFAIPEHYGTFPALHGNPEALQSELNKLQLNTAIVALQPGEAWTYP CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCCCCCC A C >Mature Secondary Structure ANTTITWLGHASFLFVTPEGKRIVLDPWYEGNPSFPESAKAELEHVDAILLTHGHMDHT CCCEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHEEEEEECCCCCCC GNAITLAQQTKAPVAGIVELIGWVQGQGVDATQCIGFNKGGCIELAGIKATLTTAHHSSS CCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHEECCCCCCEEEEECCEEEEEECCCCCC ISSGSISLYLGDPCGFILEFSDGCVVYHTGDTCVHGDMALMGEIYQPNVTILPIGDFYTM CCCCEEEEEECCCCCEEEEECCCEEEEECCCCEEECCHHEECCEECCCEEEEECCCCEEC GPRQAAHALKLIGSKFAIPEHYGTFPALHGNPEALQSELNKLQLNTAIVALQPGEAWTYP CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCCCCCC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA