| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900785
Identifier: 159900785
GI number: 159900785
Start: 5453473
End: 5454909
Strand: Direct
Name: 159900785
Synonym: Haur_4272
Alternate gene names: NA
Gene position: 5453473-5454909 (Clockwise)
Preceding gene: 159900784
Following gene: 159900786
Centisome position: 85.93
GC content: 47.39
Gene sequence:
>1437_bases ATGCAACGATTTTTTGCAACGATCGATACATATGCCAAAGCGCTGCTTACAACAATGATTGTGGGCTATATCGGGGTATT CGCTACACTGTCGTGTCTAAAATTGGCATGGTTTCGCCAAGGCTTCGATATGGCGGGCAACGAGCAAACGATTTGGAATA CCTTGCATGGGCGGCCATTCCAAATTTCGGTGTTTGCCATGATGCGCTACGATTTTGATGATGGCCCTGTGTTATTGCAA TTGCCCTTAGCATTATTGTATGGCATATATCAATCGCCCTATACGCTGCTTGTGTTGCAAACAATTGCTTTAGGCATTGC TGCTTGGCCATTGTATGCGATTGTGCGTGATCTTTTGCCAAAGCCATGGCATGCCTTGGTGATTGCTGCCATTTATTTAT TACACCCCACAACTCAGCATATCAATATGTACGAGTTTCAATTGCGCTCATTTATGATTCCATTTGCCTTGGCAGCATTA TTATATTTGCGCCGTGAACGCTTGGGATTGTATTGTTTATTTCTATTTTTGATGATGTGCACCAAAACTGAGGCAGGTTT TACGTTAATTGCCTTTGGTTTATATGCAGCTTGGCAGCGCAAGCCTTGGAAATTTATTGCATTTCCTTTGGTGCTAGGGC CAGCCTGGGTTGCGGTGGCTTTGGGCGTAATTGTTCCAGCCTTCAGCGAGGGTAATTTTATTGCTGATATTTACAGTTAT GGCAGGCTTGGCAAAACTGTTGGCGATGTGATCACAACTATGCTGACCAATCCAGCCCTTGCTTTTAGCGTCATGACCGA GCCGCCCAAACTCAAATATTTGTGGCAATTGTTTGGGCTTGGCGGCTTTTTGGCCTTGCTCAGCCCAACCTTGCTGTTGG CATTACCAGTTTTAGCGCTCAACTTAATCTCGCCCAATGCAGTCCAATTCAGCCTAAATTATCAATATGGCTCGTTAGTT TATCCATTTTTGCTCGTGGCCTCGGTCGAAGGTTTGCTGAATCTCACCCGCTGGACAGTGCGCAACTCGCAATGGCGCGA ACGGGCAGTGCATGGCGCGGTGCTGGTTTTATTGCTGATTGGGATTATTGGTAATTTGACCTTGAATAATGTGGTAAAAA CCGCTTTGAGCAACCGCGAAAATCCAACACGGGTAGCCGATGCCCGGGCAATTTTGGCTCAAGTGCCTGCCGATGCCGCT GTTGCCGCCAGCACCTTTCTGGCACCACACCTCGCCCAGCGCCAAGAAATCTACTTCTTTCCAGGCAATAAATCGTATCC CGCTGAATATATTGAGCGAGCCGAGTATTTGGTGTTTGATCGGCGGCCACCAGGCAATAGCGCCGAAACTCGCGCTGCAA TCGAGCGCTATTTGAACGATCCTGACTGGGTGATTGTGGCCGAGGCTGGCGATTTTGCCTTATTAAAGCAGCAGTAA
Upstream 100 bases:
>100_bases AAACAATCTGTGCAATCTGTGGCTAAAATAGCCTTCGTGTCCTTTGTGCCCTTCGTGGATCAAACCCAATCCCCAAATCC CTAGCTAATACGGAACAACA
Downstream 100 bases:
>100_bases CCGAAACCACGAAGGACACGAAGCGCACAAAGGGGCTAGGATTTAGGAACTAAATAAAGGTCAGTTTGTTTAAGGCAGAG GCGCAGAGAACGAAAGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 478; Mature: 478
Protein sequence:
>478_residues MQRFFATIDTYAKALLTTMIVGYIGVFATLSCLKLAWFRQGFDMAGNEQTIWNTLHGRPFQISVFAMMRYDFDDGPVLLQ LPLALLYGIYQSPYTLLVLQTIALGIAAWPLYAIVRDLLPKPWHALVIAAIYLLHPTTQHINMYEFQLRSFMIPFALAAL LYLRRERLGLYCLFLFLMMCTKTEAGFTLIAFGLYAAWQRKPWKFIAFPLVLGPAWVAVALGVIVPAFSEGNFIADIYSY GRLGKTVGDVITTMLTNPALAFSVMTEPPKLKYLWQLFGLGGFLALLSPTLLLALPVLALNLISPNAVQFSLNYQYGSLV YPFLLVASVEGLLNLTRWTVRNSQWRERAVHGAVLVLLLIGIIGNLTLNNVVKTALSNRENPTRVADARAILAQVPADAA VAASTFLAPHLAQRQEIYFFPGNKSYPAEYIERAEYLVFDRRPPGNSAETRAAIERYLNDPDWVIVAEAGDFALLKQQ
Sequences:
>Translated_478_residues MQRFFATIDTYAKALLTTMIVGYIGVFATLSCLKLAWFRQGFDMAGNEQTIWNTLHGRPFQISVFAMMRYDFDDGPVLLQ LPLALLYGIYQSPYTLLVLQTIALGIAAWPLYAIVRDLLPKPWHALVIAAIYLLHPTTQHINMYEFQLRSFMIPFALAAL LYLRRERLGLYCLFLFLMMCTKTEAGFTLIAFGLYAAWQRKPWKFIAFPLVLGPAWVAVALGVIVPAFSEGNFIADIYSY GRLGKTVGDVITTMLTNPALAFSVMTEPPKLKYLWQLFGLGGFLALLSPTLLLALPVLALNLISPNAVQFSLNYQYGSLV YPFLLVASVEGLLNLTRWTVRNSQWRERAVHGAVLVLLLIGIIGNLTLNNVVKTALSNRENPTRVADARAILAQVPADAA VAASTFLAPHLAQRQEIYFFPGNKSYPAEYIERAEYLVFDRRPPGNSAETRAAIERYLNDPDWVIVAEAGDFALLKQQ >Mature_478_residues MQRFFATIDTYAKALLTTMIVGYIGVFATLSCLKLAWFRQGFDMAGNEQTIWNTLHGRPFQISVFAMMRYDFDDGPVLLQ LPLALLYGIYQSPYTLLVLQTIALGIAAWPLYAIVRDLLPKPWHALVIAAIYLLHPTTQHINMYEFQLRSFMIPFALAAL LYLRRERLGLYCLFLFLMMCTKTEAGFTLIAFGLYAAWQRKPWKFIAFPLVLGPAWVAVALGVIVPAFSEGNFIADIYSY GRLGKTVGDVITTMLTNPALAFSVMTEPPKLKYLWQLFGLGGFLALLSPTLLLALPVLALNLISPNAVQFSLNYQYGSLV YPFLLVASVEGLLNLTRWTVRNSQWRERAVHGAVLVLLLIGIIGNLTLNNVVKTALSNRENPTRVADARAILAQVPADAA VAASTFLAPHLAQRQEIYFFPGNKSYPAEYIERAEYLVFDRRPPGNSAETRAAIERYLNDPDWVIVAEAGDFALLKQQ
Specific function: Unknown
COG id: COG3463
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53522; Mature: 53522
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRFFATIDTYAKALLTTMIVGYIGVFATLSCLKLAWFRQGFDMAGNEQTIWNTLHGRPF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCE QISVFAMMRYDFDDGPVLLQLPLALLYGIYQSPYTLLVLQTIALGIAAWPLYAIVRDLLP EEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC KPWHALVIAAIYLLHPTTQHINMYEFQLRSFMIPFALAALLYLRRERLGLYCLFLFLMMC CCHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TKTEAGFTLIAFGLYAAWQRKPWKFIAFPLVLGPAWVAVALGVIVPAFSEGNFIADIYSY HCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH GRLGKTVGDVITTMLTNPALAFSVMTEPPKLKYLWQLFGLGGFLALLSPTLLLALPVLAL HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLISPNAVQFSLNYQYGSLVYPFLLVASVEGLLNLTRWTVRNSQWRERAVHGAVLVLLLI HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH GIIGNLTLNNVVKTALSNRENPTRVADARAILAQVPADAAVAASTFLAPHLAQRQEIYFF HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEE PGNKSYPAEYIERAEYLVFDRRPPGNSAETRAAIERYLNDPDWVIVAEAGDFALLKQQ CCCCCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCEEEECCC >Mature Secondary Structure MQRFFATIDTYAKALLTTMIVGYIGVFATLSCLKLAWFRQGFDMAGNEQTIWNTLHGRPF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCE QISVFAMMRYDFDDGPVLLQLPLALLYGIYQSPYTLLVLQTIALGIAAWPLYAIVRDLLP EEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC KPWHALVIAAIYLLHPTTQHINMYEFQLRSFMIPFALAALLYLRRERLGLYCLFLFLMMC CCHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TKTEAGFTLIAFGLYAAWQRKPWKFIAFPLVLGPAWVAVALGVIVPAFSEGNFIADIYSY HCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH GRLGKTVGDVITTMLTNPALAFSVMTEPPKLKYLWQLFGLGGFLALLSPTLLLALPVLAL HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLISPNAVQFSLNYQYGSLVYPFLLVASVEGLLNLTRWTVRNSQWRERAVHGAVLVLLLI HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH GIIGNLTLNNVVKTALSNRENPTRVADARAILAQVPADAAVAASTFLAPHLAQRQEIYFF HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEE PGNKSYPAEYIERAEYLVFDRRPPGNSAETRAAIERYLNDPDWVIVAEAGDFALLKQQ CCCCCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA