Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159900780

Identifier: 159900780

GI number: 159900780

Start: 5441919

End: 5442926

Strand: Direct

Name: 159900780

Synonym: Haur_4267

Alternate gene names: NA

Gene position: 5441919-5442926 (Clockwise)

Preceding gene: 159900778

Following gene: 159900781

Centisome position: 85.75

GC content: 46.33

Gene sequence:

>1008_bases
ATGGTAGCAGAAGATTTTATCAATGCCAAACATCATGCTTGGGAACGATTAACCCAGCTAACCAGCCGTGCTCAGAGTAA
TATTATTGCCATGAATGCCACTGAATTGCAAGAGCTAGGCCGACTTTATCGCCAAGCAACCTCAGATTTAGCTCAAGCGC
GGCGCGATTTTCCAGGCCATCCCTTGACGATCTATTTAAACGATTTGGTGGCGAAGGGTCATAGCAGCATCTATCGTGAG
CGCAATTCGCCAATTACCGGAATAAAAAACTACTTTCTCTATCAACTCCCCCAAGCTTTTCGTGAGCTATTACCATTTAC
AGGCATAGCATTTTTAGCATTTTTTCTACCAGCAGTGGTTGCATGGGTCATCAGCTACCAAGATCCGGCGCGGGGAATCG
CCTTAGCCCCTGAATTTCAGCCGGCGATTGACAATATGCAAGACGACATCGAATGGTGGCGCGATTTAAACGACAACAAT
GCTGAAGGTGCAGTTATGATTCTATCCAACAACATTTTTGTCTCATTCCAGGCATTCGTAGGAGGCTTGACCTTAGGTTT
ACTAACCCTCTATGCCCTCTATTACAACGGATTAATGTTAGGAATTTTAGCGGGGTCAGCTCAAAATATAGGCTTTGCCG
ATAACCTATGGGGCTTTATTGCGGCGCATGGACCAGTCGAATTGAGCATTATCTTTCTTGCTGGTGGTGCTGGCTTACAA
CTTGCTTGGGCCATTTTGCGGCCTGGCATGGTTTCGCGCCGCGCTGCCTTGGCAATTGCTGCTCAACGGGCATTCAAAGT
CTCGGGAGCAATCGTCATGTTTCTAATCTTGGCAGGATTGATTGAAGGCTTTATTTCGCCGCAATATCTACCATTGTGGT
TTAAGATTGCAGTTGGTATTATCAGTGCTGGCAGTATGTATGCCTATCTTTTATTAGCTGGACGCAATGTCCAACAACCA
GAATCTGCTGAAGCAAGCGCCTTGAAGCTTGAAACCCCAGCACACTAG

Upstream 100 bases:

>100_bases
CAAACTCAATACTTTCGGGAGTATCAATAATATAGCGATCACTTCCACGATTATCGATCATCTCTATCTCCAAACAATAT
ATTAGTAGAGGAGTAGCTTT

Downstream 100 bases:

>100_bases
AGGATCATAATGAAACGACGAGATCAATTAGCGATTGGTTTGATTTGTGCAGCTTTAGTTGGATGCGGCACACCAGTTGC
TAGCCGCCCAACTCCCAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MVAEDFINAKHHAWERLTQLTSRAQSNIIAMNATELQELGRLYRQATSDLAQARRDFPGHPLTIYLNDLVAKGHSSIYRE
RNSPITGIKNYFLYQLPQAFRELLPFTGIAFLAFFLPAVVAWVISYQDPARGIALAPEFQPAIDNMQDDIEWWRDLNDNN
AEGAVMILSNNIFVSFQAFVGGLTLGLLTLYALYYNGLMLGILAGSAQNIGFADNLWGFIAAHGPVELSIIFLAGGAGLQ
LAWAILRPGMVSRRAALAIAAQRAFKVSGAIVMFLILAGLIEGFISPQYLPLWFKIAVGIISAGSMYAYLLLAGRNVQQP
ESAEASALKLETPAH

Sequences:

>Translated_335_residues
MVAEDFINAKHHAWERLTQLTSRAQSNIIAMNATELQELGRLYRQATSDLAQARRDFPGHPLTIYLNDLVAKGHSSIYRE
RNSPITGIKNYFLYQLPQAFRELLPFTGIAFLAFFLPAVVAWVISYQDPARGIALAPEFQPAIDNMQDDIEWWRDLNDNN
AEGAVMILSNNIFVSFQAFVGGLTLGLLTLYALYYNGLMLGILAGSAQNIGFADNLWGFIAAHGPVELSIIFLAGGAGLQ
LAWAILRPGMVSRRAALAIAAQRAFKVSGAIVMFLILAGLIEGFISPQYLPLWFKIAVGIISAGSMYAYLLLAGRNVQQP
ESAEASALKLETPAH
>Mature_335_residues
MVAEDFINAKHHAWERLTQLTSRAQSNIIAMNATELQELGRLYRQATSDLAQARRDFPGHPLTIYLNDLVAKGHSSIYRE
RNSPITGIKNYFLYQLPQAFRELLPFTGIAFLAFFLPAVVAWVISYQDPARGIALAPEFQPAIDNMQDDIEWWRDLNDNN
AEGAVMILSNNIFVSFQAFVGGLTLGLLTLYALYYNGLMLGILAGSAQNIGFADNLWGFIAAHGPVELSIIFLAGGAGLQ
LAWAILRPGMVSRRAALAIAAQRAFKVSGAIVMFLILAGLIEGFISPQYLPLWFKIAVGIISAGSMYAYLLLAGRNVQQP
ESAEASALKLETPAH

Specific function: Unknown

COG id: COG1300

COG function: function code S; Uncharacterized membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36760; Mature: 36760

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAEDFINAKHHAWERLTQLTSRAQSNIIAMNATELQELGRLYRQATSDLAQARRDFPGH
CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PLTIYLNDLVAKGHSSIYRERNSPITGIKNYFLYQLPQAFRELLPFTGIAFLAFFLPAVV
CEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
AWVISYQDPARGIALAPEFQPAIDNMQDDIEWWRDLNDNNAEGAVMILSNNIFVSFQAFV
HHHHHCCCCCCCEEECCCCCHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCEEEEHHHHH
GGLTLGLLTLYALYYNGLMLGILAGSAQNIGFADNLWGFIAAHGPVELSIIFLAGGAGLQ
HHHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCHHHHHHHHEECCCEEEEEEEEECCCCHH
LAWAILRPGMVSRRAALAIAAQRAFKVSGAIVMFLILAGLIEGFISPQYLPLWFKIAVGI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ISAGSMYAYLLLAGRNVQQPESAEASALKLETPAH
HCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
>Mature Secondary Structure
MVAEDFINAKHHAWERLTQLTSRAQSNIIAMNATELQELGRLYRQATSDLAQARRDFPGH
CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PLTIYLNDLVAKGHSSIYRERNSPITGIKNYFLYQLPQAFRELLPFTGIAFLAFFLPAVV
CEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
AWVISYQDPARGIALAPEFQPAIDNMQDDIEWWRDLNDNNAEGAVMILSNNIFVSFQAFV
HHHHHCCCCCCCEEECCCCCHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCEEEEHHHHH
GGLTLGLLTLYALYYNGLMLGILAGSAQNIGFADNLWGFIAAHGPVELSIIFLAGGAGLQ
HHHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCHHHHHHHHEECCCEEEEEEEEECCCCHH
LAWAILRPGMVSRRAALAIAAQRAFKVSGAIVMFLILAGLIEGFISPQYLPLWFKIAVGI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ISAGSMYAYLLLAGRNVQQPESAEASALKLETPAH
HCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA