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The map label for this gene is yycF [H]

Identifier: 159900628

GI number: 159900628

Start: 5261876

End: 5262811

Strand: Reverse

Name: yycF [H]

Synonym: Haur_4115

Alternate gene names: 159900628

Gene position: 5262811-5261876 (Counterclockwise)

Preceding gene: 159900629

Following gene: 159900627

Centisome position: 82.92

GC content: 50.85

Gene sequence:

>936_bases
GTGAGCAAAGAACGCATCTTAGTCGTCGAAGACCAAGCCGATATCTCTGGCTTGCTCAAAATTTACTTCACCTCGCAAGG
TTATGAAGTGATGACCGCGATGCGCGGGCAGGTAGCGCTCGATCTTGTGAAACGCACGCCGCCGCATTTGGCCTTGCTTG
ATGTGAATTTGCCCGATATGACCGGGTATGATATTGGAAAAGCACTGCGTGCCAATGCCCGTACAAAGCATATTCCAATC
ATTTTCTTGACCGCCCGTGGTGAAAAAAGCGATAAAGGCATTGGCCTCGGTGAAGTCCAAGCCAATGACTATATCGTCAA
GCCCTTCGATATTGAAGAAGTCCATATGCGGGTGCGCAATAACTTGGCCTTGGCTCGCGAAAAGAGCCGCACCCACCCGG
TGACTGGCCTGCCAACCGCCGAATTGATTAACGAAGAACTCCGCCGTTTGCTCTCAGCCGAAGTTTGGACGCTGGCAACC
GTGCATATCAATGGCTTCGATACCTTTACCCAAGTCTATGGCTCGGTCGTCGGCGAGGATGTGCTGAAGTTTGGCGCATT
GTTGATCAACGAAGTCGTCAGCGAGTTGGGTGGCCAAGAGGAGTTCATCGGTCAATTGGTCACAGGGCCAGATTTCTTGA
TTACGTCGATGCCTGAACGCGCTAAAGCAATTGTCGATCGTATCGCTGAACGCTTTGATCAAGAAATTGGCTTGCACTAT
AGCTATCCCGACCGTAAACGTGGCTATATTTTGGCTAAAAATGCCGATGGTACTGAACGCCAAGAACCACTGATGACGGT
TTCAATCGGGGTGCTCGATAGCAACGATGGGCCATTCTACGATATCCGTGAACTCAGCGAAACGGCTGAAAGTGTGCGCC
CATTGCCCAACCTGCAAGATGGTTCAGTTCGTAGCGCTGTGAAATTTGGCCGCTAA

Upstream 100 bases:

>100_bases
AACGTGTTCCAGTTAACGATCGCGTCGCAGATGAGTACCCAGCAGAACAATTCCGTGATTAACGCTGCATCGCACGCGGC
GTGCGATGATGGAGGATACT

Downstream 100 bases:

>100_bases
GCCAGGAGTTAATTCCTGTGCCTAAAGAACACAAATGCCCATGAAAATCTCTCCTCCTTCCACCGCAATTTGGCACGTGT
TAACAGGCATTGCTCACCTC

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSKERILVVEDQADISGLLKIYFTSQGYEVMTAMRGQVALDLVKRTPPHLALLDVNLPDMTGYDIGKALRANARTKHIPI
IFLTARGEKSDKGIGLGEVQANDYIVKPFDIEEVHMRVRNNLALAREKSRTHPVTGLPTAELINEELRRLLSAEVWTLAT
VHINGFDTFTQVYGSVVGEDVLKFGALLINEVVSELGGQEEFIGQLVTGPDFLITSMPERAKAIVDRIAERFDQEIGLHY
SYPDRKRGYILAKNADGTERQEPLMTVSIGVLDSNDGPFYDIRELSETAESVRPLPNLQDGSVRSAVKFGR

Sequences:

>Translated_311_residues
MSKERILVVEDQADISGLLKIYFTSQGYEVMTAMRGQVALDLVKRTPPHLALLDVNLPDMTGYDIGKALRANARTKHIPI
IFLTARGEKSDKGIGLGEVQANDYIVKPFDIEEVHMRVRNNLALAREKSRTHPVTGLPTAELINEELRRLLSAEVWTLAT
VHINGFDTFTQVYGSVVGEDVLKFGALLINEVVSELGGQEEFIGQLVTGPDFLITSMPERAKAIVDRIAERFDQEIGLHY
SYPDRKRGYILAKNADGTERQEPLMTVSIGVLDSNDGPFYDIRELSETAESVRPLPNLQDGSVRSAVKFGR
>Mature_310_residues
SKERILVVEDQADISGLLKIYFTSQGYEVMTAMRGQVALDLVKRTPPHLALLDVNLPDMTGYDIGKALRANARTKHIPII
FLTARGEKSDKGIGLGEVQANDYIVKPFDIEEVHMRVRNNLALAREKSRTHPVTGLPTAELINEELRRLLSAEVWTLATV
HINGFDTFTQVYGSVVGEDVLKFGALLINEVVSELGGQEEFIGQLVTGPDFLITSMPERAKAIVDRIAERFDQEIGLHYS
YPDRKRGYILAKNADGTERQEPLMTVSIGVLDSNDGPFYDIRELSETAESVRPLPNLQDGSVRSAVKFGR

Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF. Binds to the ftsAZ P1 promoter seque

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790860, Length=142, Percent_Identity=35.9154929577465, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789809, Length=137, Percent_Identity=37.2262773722628, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1790863, Length=137, Percent_Identity=34.3065693430657, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788394, Length=118, Percent_Identity=38.9830508474576, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786599, Length=115, Percent_Identity=38.2608695652174, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787229, Length=117, Percent_Identity=35.8974358974359, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788550, Length=125, Percent_Identity=33.6, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787375, Length=181, Percent_Identity=33.1491712707182, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082012, Length=133, Percent_Identity=33.8345864661654, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786911, Length=128, Percent_Identity=35.9375, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786784, Length=120, Percent_Identity=38.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790552, Length=115, Percent_Identity=34.7826086956522, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI2367329, Length=115, Percent_Identity=41.7391304347826, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 34581; Mature: 34450

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKERILVVEDQADISGLLKIYFTSQGYEVMTAMRGQVALDLVKRTPPHLALLDVNLPDM
CCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
TGYDIGKALRANARTKHIPIIFLTARGEKSDKGIGLGEVQANDYIVKPFDIEEVHMRVRN
CCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCEEECCCCHHHHHHHHHH
NLALAREKSRTHPVTGLPTAELINEELRRLLSAEVWTLATVHINGFDTFTQVYGSVVGED
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHH
VLKFGALLINEVVSELGGQEEFIGQLVTGPDFLITSMPERAKAIVDRIAERFDQEIGLHY
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCEE
SYPDRKRGYILAKNADGTERQEPLMTVSIGVLDSNDGPFYDIRELSETAESVRPLPNLQD
CCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
GSVRSAVKFGR
CCHHHHHHCCC
>Mature Secondary Structure 
SKERILVVEDQADISGLLKIYFTSQGYEVMTAMRGQVALDLVKRTPPHLALLDVNLPDM
CCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
TGYDIGKALRANARTKHIPIIFLTARGEKSDKGIGLGEVQANDYIVKPFDIEEVHMRVRN
CCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCEEECCCCHHHHHHHHHH
NLALAREKSRTHPVTGLPTAELINEELRRLLSAEVWTLATVHINGFDTFTQVYGSVVGED
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHH
VLKFGALLINEVVSELGGQEEFIGQLVTGPDFLITSMPERAKAIVDRIAERFDQEIGLHY
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCEE
SYPDRKRGYILAKNADGTERQEPLMTVSIGVLDSNDGPFYDIRELSETAESVRPLPNLQD
CCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
GSVRSAVKFGR
CCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 9829949; 10878122 [H]