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The map label for this gene is aml [H]

Identifier: 159900578

GI number: 159900578

Start: 5190483

End: 5192273

Strand: Reverse

Name: aml [H]

Synonym: Haur_4065

Alternate gene names: 159900578

Gene position: 5192273-5190483 (Counterclockwise)

Preceding gene: 159900590

Following gene: 159900570

Centisome position: 81.81

GC content: 53.21

Gene sequence:

>1791_bases
ATGTCACGGACCACTCGCGCAATGGCGCGGCTGACACTGTTCGTCTTGGTTGTGATCATCTTCTCGGTTGGCTTTTTTGG
AACCGCTCCACGGGCAACGCAAGCCCAAACTACTCCACGCACGGCCTTCGTCCATTTATTCGAATGGAAATGGACTGACA
TCGCCAAAGAATGCGAAAATTGGCTCGGCCCCAAGGGCTTCGCTGCTGTTCAAGTCTCGCCACCCCAAGAGCATATCCAA
GGCTCGCAATGGTGGACGCGCTATCAACCAGTTAGCTATCAGATTCAAAGCCGCTCGGGCACTCGCGCCGAGTTCGCCAA
CATGGTTTCACGCTGTAAAGCTGTTGGGGTTGATATTTATGTCGATGCCGTGATCAACCACATGACCGGCGTGGGCAGTG
GCACGGGCGTAGCTGGCTCAAGCTACACCAGCTACAATTACCCCGGTAATTATCAAACTCAAGATTTCCACCACTGTGGC
CGCAATGGCAACGACGATATCAGCAACTACCAAGATCGCTGGGAAGTTCAAAATTGTGAGTTGGTTAACCTCGCCGATCT
CAAAACTGAATCAGATTATGTTCGCGGCAAATTAGCTGCCTATTTGAATGATCTGCGCAGTTTGGGCGTAGCTGGCTTCC
GCATTGATGCTGCCAAGCATATGCCCGCCGCTGATATTGCCAACATCATGAGCCGCGCCAGCAATCCTTACATCTATCAA
GAAGTGATTGACCAAGGCGGCGAGCCAATTACCTCAGGCGAATATACGGGCAACGGCGATGTGACTGAGTTCAAATACAG
CACCAACATTGGCCGCATGTTCAAAACCGACAAGCTTGCCAACATGAGCAACTTCGGCACAGCTTGGGGCTTTATCGCCA
GCGATAGTGCGGTGGTTTTCACCGATAACCACGACAACCAACGCGGCCATGGCGGCGCTGGCAATGTCGTTACCTTCAAA
GATGGCAAACTCTACGAACTTGCCAACGTCTTCGCTCTAGCTTGGCCCTATGGCTATCCCCAAGTCATGTCGAGCTACAA
CTTCAGCAACGGCGACCAAGGCCCACCCAGCAGCAATGTCTACAATGGCAACACCGCCGATTGCGGTGGCAGCAACTGGG
TTTGTGAACATCGCTGGCGCGGCATCGCCAATATGGTTGGCTTCCGCAACTACACTAGCACAGCCTTCAGCACCAGCAAC
TGGTGGTCGAATGGCAATAATCAAATTTCGTTCAGCCGTGGCAGCTTGGGCTTCGTAGCAATCAACCGCGAAGGCAGCAG
CTTGAGCCGCACCTTTGCTACGGGCTTGCCCGCCGGAACCTACTGCGATGTAATTCACGGCGATTTCAACAATGGCTCGT
GCTCTGGCCCAACCATCAGCGTCAACAGCAGTGGCCAAGCAACAATCACGGTCGCCGCAATGGATTCAGTGGCAATTCAT
GGTGGCGCAAAAATCAATGGCACTAACCCAACGCCAGTGCCAACCACCCCACCAAGCGGCAGCATCGCTGTCACCTTCAA
CGAAAATGCCACCACGGTTTGGGGCCAAAATGTCTATGTGATTGGCAATGTCTCGGCACTTGGTAGCTGGAACACCGCCA
ATGCTGTGTTGCTCTCATCAGCAAGCTACCCAGTTTGGAGCAAGACAATCAACTTGCCAGCCAGCACCGCCATCGAATAC
AAATACATCAAGAAAGATGGTTCGGGCAATGTGACCTGGGAAAGCGGTAGTAACCGTACATTTACCACGCCAAGCAGCGG
CACGGTCACCCGCAACGATACCTGGAAATAG

Upstream 100 bases:

>100_bases
CCCCGTAGGTGCTGTGTCGTTTCAACAATCCTAGGCCTGAAGCTGGCACGGCAGATTTAACATATCGATCAACCGTTCAC
GCCCCAAAGGAGGGACGTTT

Downstream 100 bases:

>100_bases
CTGTTGAGTTTTTAACCACGAAGGACACGAAGAGCACGAATGTTAGGCTCGTTGGAAACCTGAGTTTTGTACAAGACATC
AGAGAACCAATAACCCAAAC

Product: alpha-amylase

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MSRTTRAMARLTLFVLVVIIFSVGFFGTAPRATQAQTTPRTAFVHLFEWKWTDIAKECENWLGPKGFAAVQVSPPQEHIQ
GSQWWTRYQPVSYQIQSRSGTRAEFANMVSRCKAVGVDIYVDAVINHMTGVGSGTGVAGSSYTSYNYPGNYQTQDFHHCG
RNGNDDISNYQDRWEVQNCELVNLADLKTESDYVRGKLAAYLNDLRSLGVAGFRIDAAKHMPAADIANIMSRASNPYIYQ
EVIDQGGEPITSGEYTGNGDVTEFKYSTNIGRMFKTDKLANMSNFGTAWGFIASDSAVVFTDNHDNQRGHGGAGNVVTFK
DGKLYELANVFALAWPYGYPQVMSSYNFSNGDQGPPSSNVYNGNTADCGGSNWVCEHRWRGIANMVGFRNYTSTAFSTSN
WWSNGNNQISFSRGSLGFVAINREGSSLSRTFATGLPAGTYCDVIHGDFNNGSCSGPTISVNSSGQATITVAAMDSVAIH
GGAKINGTNPTPVPTTPPSGSIAVTFNENATTVWGQNVYVIGNVSALGSWNTANAVLLSSASYPVWSKTINLPASTAIEY
KYIKKDGSGNVTWESGSNRTFTTPSSGTVTRNDTWK

Sequences:

>Translated_596_residues
MSRTTRAMARLTLFVLVVIIFSVGFFGTAPRATQAQTTPRTAFVHLFEWKWTDIAKECENWLGPKGFAAVQVSPPQEHIQ
GSQWWTRYQPVSYQIQSRSGTRAEFANMVSRCKAVGVDIYVDAVINHMTGVGSGTGVAGSSYTSYNYPGNYQTQDFHHCG
RNGNDDISNYQDRWEVQNCELVNLADLKTESDYVRGKLAAYLNDLRSLGVAGFRIDAAKHMPAADIANIMSRASNPYIYQ
EVIDQGGEPITSGEYTGNGDVTEFKYSTNIGRMFKTDKLANMSNFGTAWGFIASDSAVVFTDNHDNQRGHGGAGNVVTFK
DGKLYELANVFALAWPYGYPQVMSSYNFSNGDQGPPSSNVYNGNTADCGGSNWVCEHRWRGIANMVGFRNYTSTAFSTSN
WWSNGNNQISFSRGSLGFVAINREGSSLSRTFATGLPAGTYCDVIHGDFNNGSCSGPTISVNSSGQATITVAAMDSVAIH
GGAKINGTNPTPVPTTPPSGSIAVTFNENATTVWGQNVYVIGNVSALGSWNTANAVLLSSASYPVWSKTINLPASTAIEY
KYIKKDGSGNVTWESGSNRTFTTPSSGTVTRNDTWK
>Mature_595_residues
SRTTRAMARLTLFVLVVIIFSVGFFGTAPRATQAQTTPRTAFVHLFEWKWTDIAKECENWLGPKGFAAVQVSPPQEHIQG
SQWWTRYQPVSYQIQSRSGTRAEFANMVSRCKAVGVDIYVDAVINHMTGVGSGTGVAGSSYTSYNYPGNYQTQDFHHCGR
NGNDDISNYQDRWEVQNCELVNLADLKTESDYVRGKLAAYLNDLRSLGVAGFRIDAAKHMPAADIANIMSRASNPYIYQE
VIDQGGEPITSGEYTGNGDVTEFKYSTNIGRMFKTDKLANMSNFGTAWGFIASDSAVVFTDNHDNQRGHGGAGNVVTFKD
GKLYELANVFALAWPYGYPQVMSSYNFSNGDQGPPSSNVYNGNTADCGGSNWVCEHRWRGIANMVGFRNYTSTAFSTSNW
WSNGNNQISFSRGSLGFVAINREGSSLSRTFATGLPAGTYCDVIHGDFNNGSCSGPTISVNSSGQATITVAAMDSVAIHG
GAKINGTNPTPVPTTPPSGSIAVTFNENATTVWGQNVYVIGNVSALGSWNTANAVLLSSASYPVWSKTINLPASTAIEYK
YIKKDGSGNVTWESGSNRTFTTPSSGTVTRNDTWK

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM20 (carbohydrate binding type-20) domain [H]

Homologues:

Organism=Homo sapiens, GI10280622, Length=520, Percent_Identity=48.0769230769231, Blast_Score=438, Evalue=1e-123,
Organism=Homo sapiens, GI4502085, Length=520, Percent_Identity=47.8846153846154, Blast_Score=436, Evalue=1e-122,
Organism=Homo sapiens, GI56549664, Length=513, Percent_Identity=47.953216374269, Blast_Score=432, Evalue=1e-121,
Organism=Homo sapiens, GI56549662, Length=513, Percent_Identity=47.953216374269, Blast_Score=432, Evalue=1e-121,
Organism=Homo sapiens, GI40254482, Length=513, Percent_Identity=47.953216374269, Blast_Score=432, Evalue=1e-121,
Organism=Homo sapiens, GI56549660, Length=513, Percent_Identity=47.953216374269, Blast_Score=432, Evalue=1e-121,
Organism=Caenorhabditis elegans, GI17558728, Length=554, Percent_Identity=39.8916967509025, Blast_Score=360, Evalue=1e-99,
Organism=Drosophila melanogaster, GI18859631, Length=475, Percent_Identity=51.1578947368421, Blast_Score=447, Evalue=1e-126,
Organism=Drosophila melanogaster, GI24654362, Length=475, Percent_Identity=50.7368421052632, Blast_Score=445, Evalue=1e-125,
Organism=Drosophila melanogaster, GI17137384, Length=476, Percent_Identity=46.218487394958, Blast_Score=411, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006048
- InterPro:   IPR013784
- InterPro:   IPR006046
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR002044
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF00686 CBM_20 [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 64608; Mature: 64477

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS51166 CBM20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTTRAMARLTLFVLVVIIFSVGFFGTAPRATQAQTTPRTAFVHLFEWKWTDIAKECEN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHH
WLGPKGFAAVQVSPPQEHIQGSQWWTRYQPVSYQIQSRSGTRAEFANMVSRCKAVGVDIY
HCCCCCEEEEEECCCHHHCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEE
VDAVINHMTGVGSGTGVAGSSYTSYNYPGNYQTQDFHHCGRNGNDDISNYQDRWEVQNCE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHCHHHHHCCCCCE
LVNLADLKTESDYVRGKLAAYLNDLRSLGVAGFRIDAAKHMPAADIANIMSRASNPYIYQ
EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHCCCCEEHH
EVIDQGGEPITSGEYTGNGDVTEFKYSTNIGRMFKTDKLANMSNFGTAWGFIASDSAVVF
HHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECCCEEEE
TDNHDNQRGHGGAGNVVTFKDGKLYELANVFALAWPYGYPQVMSSYNFSNGDQGPPSSNV
ECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHEECCCCCHHHHHCCCCCCCCCCCCCCCC
YNGNTADCGGSNWVCEHRWRGIANMVGFRNYTSTAFSTSNWWSNGNNQISFSRGSLGFVA
CCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEECCCCCCCCCCEEEEECCCEEEEE
INREGSSLSRTFATGLPAGTYCDVIHGDFNNGSCSGPTISVNSSGQATITVAAMDSVAIH
EECCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEEECEEEEE
GGAKINGTNPTPVPTTPPSGSIAVTFNENATTVWGQNVYVIGNVSALGSWNTANAVLLSS
CCEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECCEEEEEECCHHCCCCCCCCEEEEEC
ASYPVWSKTINLPASTAIEYKYIKKDGSGNVTWESGSNRTFTTPSSGTVTRNDTWK
CCCCCEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCEEEECCCCCEECCCCCCC
>Mature Secondary Structure 
SRTTRAMARLTLFVLVVIIFSVGFFGTAPRATQAQTTPRTAFVHLFEWKWTDIAKECEN
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHH
WLGPKGFAAVQVSPPQEHIQGSQWWTRYQPVSYQIQSRSGTRAEFANMVSRCKAVGVDIY
HCCCCCEEEEEECCCHHHCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEE
VDAVINHMTGVGSGTGVAGSSYTSYNYPGNYQTQDFHHCGRNGNDDISNYQDRWEVQNCE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHCHHHHHCCCCCE
LVNLADLKTESDYVRGKLAAYLNDLRSLGVAGFRIDAAKHMPAADIANIMSRASNPYIYQ
EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHCCCCEEHH
EVIDQGGEPITSGEYTGNGDVTEFKYSTNIGRMFKTDKLANMSNFGTAWGFIASDSAVVF
HHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECCCEEEE
TDNHDNQRGHGGAGNVVTFKDGKLYELANVFALAWPYGYPQVMSSYNFSNGDQGPPSSNV
ECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHEECCCCCHHHHHCCCCCCCCCCCCCCCC
YNGNTADCGGSNWVCEHRWRGIANMVGFRNYTSTAFSTSNWWSNGNNQISFSRGSLGFVA
CCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEECCCCCCCCCCEEEEECCCEEEEE
INREGSSLSRTFATGLPAGTYCDVIHGDFNNGSCSGPTISVNSSGQATITVAAMDSVAIH
EECCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEEECEEEEE
GGAKINGTNPTPVPTTPPSGSIAVTFNENATTVWGQNVYVIGNVSALGSWNTANAVLLSS
CCEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECCEEEEEECCHHCCCCCCCCEEEEEC
ASYPVWSKTINLPASTAIEYKYIKKDGSGNVTWESGSNRTFTTPSSGTVTRNDTWK
CCCCCEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCEEEECCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3266752 [H]