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The map label for this gene is ideR [H]

Identifier: 159900544

GI number: 159900544

Start: 5145909

End: 5146580

Strand: Reverse

Name: ideR [H]

Synonym: Haur_4031

Alternate gene names: 159900544

Gene position: 5146580-5145909 (Counterclockwise)

Preceding gene: 159900545

Following gene: 159900543

Centisome position: 81.09

GC content: 50.6

Gene sequence:

>672_bases
ATGCGAATTACGGCAGGCGTACAAGATTATGTGAAAGCAATTTATACCCTTCAACAAGAGGAAGCGCCTGTCTCCAACGG
TCGGCTGGCTAGTTACTTCGGGTTTAGTGCGCCCACCATCACCGAGATGCTCAAAAAGCTCGAGAGTTTAGAATTAGTCG
ATTATCAGGCTCGTTATGGGGTGCGGCTCACCGAGATTGGCGAGAAAATCGCGCTTGAGATGATTCGTCACCATCGTTTG
CTGGAACTCTATTTGGTGCAAGCCCTTGGCATGTCGTGGGATGAAGTTCACGATGAGGCCGAAGTGTTGGAGCATGTGCT
CTCTGAAGCGCTGGAAGAACGAATTGCCGAATATTTGGGGCATCCCCAATTTGATCCCCATGGTTCGCCCATTCCGGCCC
GCGATGGCAGTATTCCGCAGCGTGATTCATGCTCATTGGCTTTGTTGGAGCTGAATCAAATTGCGCGGATCGTCGAGGTT
GAAGATCGTGATGCTGCTCGTTTGCGCTACCTGGCGGATCTAGGTTTAACTCCCAACAACGTTATTACAATTATTGCCCG
AGCACCGTTTGATGGCCCATTGACCTTGTGGGTTGGTGCTGAGCAAACCCAACAGGTGCTTGATTCACGCTTGGCAACGC
GCATTCAAGTGCAAATCGAGCGTTCAATTTAG

Upstream 100 bases:

>100_bases
AGCTGTCTGACCGAATCCTCACACGTTTGATAACCACTTGACATTTAACCTCAATCAACTTTATACTTAGGTGGTACCTA
AAAGAAAGGATTGATAGGTT

Downstream 100 bases:

>100_bases
ACGCTCTTTTTTACTTACCGCTTTTAGGTATGCCTAAATAATTTATTTTATCATTAAAATGAGGTAGTTCTATGCAACGA
AAAAATCTTTTGGTATTGCT

Product: DtxR family iron dependent repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRITAGVQDYVKAIYTLQQEEAPVSNGRLASYFGFSAPTITEMLKKLESLELVDYQARYGVRLTEIGEKIALEMIRHHRL
LELYLVQALGMSWDEVHDEAEVLEHVLSEALEERIAEYLGHPQFDPHGSPIPARDGSIPQRDSCSLALLELNQIARIVEV
EDRDAARLRYLADLGLTPNNVITIIARAPFDGPLTLWVGAEQTQQVLDSRLATRIQVQIERSI

Sequences:

>Translated_223_residues
MRITAGVQDYVKAIYTLQQEEAPVSNGRLASYFGFSAPTITEMLKKLESLELVDYQARYGVRLTEIGEKIALEMIRHHRL
LELYLVQALGMSWDEVHDEAEVLEHVLSEALEERIAEYLGHPQFDPHGSPIPARDGSIPQRDSCSLALLELNQIARIVEV
EDRDAARLRYLADLGLTPNNVITIIARAPFDGPLTLWVGAEQTQQVLDSRLATRIQVQIERSI
>Mature_223_residues
MRITAGVQDYVKAIYTLQQEEAPVSNGRLASYFGFSAPTITEMLKKLESLELVDYQARYGVRLTEIGEKIALEMIRHHRL
LELYLVQALGMSWDEVHDEAEVLEHVLSEALEERIAEYLGHPQFDPHGSPIPARDGSIPQRDSCSLALLELNQIARIVEV
EDRDAARLRYLADLGLTPNNVITIIARAPFDGPLTLWVGAEQTQQVLDSRLATRIQVQIERSI

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 25144; Mature: 25144

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50944 HTH_DTXR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITAGVQDYVKAIYTLQQEEAPVSNGRLASYFGFSAPTITEMLKKLESLELVDYQARYG
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
VRLTEIGEKIALEMIRHHRLLELYLVQALGMSWDEVHDEAEVLEHVLSEALEERIAEYLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHC
HPQFDPHGSPIPARDGSIPQRDSCSLALLELNQIARIVEVEDRDAARLRYLADLGLTPNN
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
VITIIARAPFDGPLTLWVGAEQTQQVLDSRLATRIQVQIERSI
EEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHEEEEECCC
>Mature Secondary Structure
MRITAGVQDYVKAIYTLQQEEAPVSNGRLASYFGFSAPTITEMLKKLESLELVDYQARYG
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
VRLTEIGEKIALEMIRHHRLLELYLVQALGMSWDEVHDEAEVLEHVLSEALEERIAEYLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHC
HPQFDPHGSPIPARDGSIPQRDSCSLALLELNQIARIVEVEDRDAARLRYLADLGLTPNN
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
VITIIARAPFDGPLTLWVGAEQTQQVLDSRLATRIQVQIERSI
EEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]