| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900533
Identifier: 159900533
GI number: 159900533
Start: 5128378
End: 5129307
Strand: Direct
Name: 159900533
Synonym: Haur_4020
Alternate gene names: NA
Gene position: 5128378-5129307 (Clockwise)
Preceding gene: 159900529
Following gene: 159900534
Centisome position: 80.81
GC content: 49.25
Gene sequence:
>930_bases ATGAGCAACTGGGAAAAGACGTTTGGTAAGCGCGATTTACCAACACCACCAGCATGGGTCAATTTTTTCAATCCACAGCA ATGGCAAGATTTTCGCCAAATCGTGGAGCGTTATTTGAAAAATCTTGGTTTGCCCGTGCGGCCTGAAAACCAAGGCTTTG TGGTGCTTGCTGACCATGCAGGGTGGAGTAAAGATACCCGCATTGGGTTAAGCTCACTGGCTCAAAAATGCTATGCCCAT CCCCAATCGCAATGGCTGGCAGTTATTACCGATCATTTTGAGGCAATGCACAAGGGTTTTGAAAACGAAGTGCTCTTGCA AGATGAAATAAACGATTTTGAAAGTATTCGCGATTTGTTGGCAATTCGCTTGTGGGCCTTGGAGCCTGAGTTACGCGAGA AGCTGATTTATCGCGAAGATTTACAGGATGTCTGCTCGGTGCTGGTGTTTGATTTGCCCACCACGATTCGTAGCGTAAGC AGCGACGAAGCGATGGCTTGGGGCAAAACCAACGAGGAATTGTTTGCGGTCGCCTTGGAAAACTTGCGTGGGCGTGAGTT GCGCCTCACCGAACATGAACTGGACGATGGCATTAACGTGCTAGCTATCACTGGCGACGATTTCTTGATTGGTTCGCAAA GCCTGTTGCTTGAGCAATACCCGCAATGTGTCGGGCGTTTCGGCTCGTTGGTAGCAGTGCCCAATCGCCATGTGGTGCTA TGCTATCCCATTAATGAGCCAATTGCCTTGGAAGCTTGGACGAGCATGTTACCAGTCGTGGAAGGCATGTATCGCAATGG GCCTGGCTCGATCTCCAATCAGGTTTTTTGGTACGATAACGGTGCATTTACCCACTTGCCCCACTCGCAAGAGCAGCAAG CGGTGCGTTTATCGCCGCCAACTACCTTTTTAACGACCTTTCAAGAATAG
Upstream 100 bases:
>100_bases GATGGCAACGCTCGGCTATACTTTGGTCATCCTGCTGCCATACCAAATGCTTGGTGTGTTTGGGCGTTGGTAGCAGCGTC AGCGTTTATAGGGGGGAACC
Downstream 100 bases:
>100_bases AAGCTCAAACCAGATTAAAATTCGCTAGCCTGCTGTTGCCAGAAGGGTCAACAGCAGGTTTTTTGTTGTTTAATTGATAA GGTACACACTGCAACTACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MSNWEKTFGKRDLPTPPAWVNFFNPQQWQDFRQIVERYLKNLGLPVRPENQGFVVLADHAGWSKDTRIGLSSLAQKCYAH PQSQWLAVITDHFEAMHKGFENEVLLQDEINDFESIRDLLAIRLWALEPELREKLIYREDLQDVCSVLVFDLPTTIRSVS SDEAMAWGKTNEELFAVALENLRGRELRLTEHELDDGINVLAITGDDFLIGSQSLLLEQYPQCVGRFGSLVAVPNRHVVL CYPINEPIALEAWTSMLPVVEGMYRNGPGSISNQVFWYDNGAFTHLPHSQEQQAVRLSPPTTFLTTFQE
Sequences:
>Translated_309_residues MSNWEKTFGKRDLPTPPAWVNFFNPQQWQDFRQIVERYLKNLGLPVRPENQGFVVLADHAGWSKDTRIGLSSLAQKCYAH PQSQWLAVITDHFEAMHKGFENEVLLQDEINDFESIRDLLAIRLWALEPELREKLIYREDLQDVCSVLVFDLPTTIRSVS SDEAMAWGKTNEELFAVALENLRGRELRLTEHELDDGINVLAITGDDFLIGSQSLLLEQYPQCVGRFGSLVAVPNRHVVL CYPINEPIALEAWTSMLPVVEGMYRNGPGSISNQVFWYDNGAFTHLPHSQEQQAVRLSPPTTFLTTFQE >Mature_308_residues SNWEKTFGKRDLPTPPAWVNFFNPQQWQDFRQIVERYLKNLGLPVRPENQGFVVLADHAGWSKDTRIGLSSLAQKCYAHP QSQWLAVITDHFEAMHKGFENEVLLQDEINDFESIRDLLAIRLWALEPELREKLIYREDLQDVCSVLVFDLPTTIRSVSS DEAMAWGKTNEELFAVALENLRGRELRLTEHELDDGINVLAITGDDFLIGSQSLLLEQYPQCVGRFGSLVAVPNRHVVLC YPINEPIALEAWTSMLPVVEGMYRNGPGSISNQVFWYDNGAFTHLPHSQEQQAVRLSPPTTFLTTFQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35344; Mature: 35213
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNWEKTFGKRDLPTPPAWVNFFNPQQWQDFRQIVERYLKNLGLPVRPENQGFVVLADHA CCCHHHHCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC GWSKDTRIGLSSLAQKCYAHPQSQWLAVITDHFEAMHKGFENEVLLQDEINDFESIRDLL CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHH AIRLWALEPELREKLIYREDLQDVCSVLVFDLPTTIRSVSSDEAMAWGKTNEELFAVALE HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEECCCCCHHHHHHHHH NLRGRELRLTEHELDDGINVLAITGDDFLIGSQSLLLEQYPQCVGRFGSLVAVPNRHVVL HCCCCEEEEHHHHHCCCCEEEEEECCCEEECCHHHHHHHHHHHHHHHCCEEECCCCCEEE CYPINEPIALEAWTSMLPVVEGMYRNGPGSISNQVFWYDNGAFTHLPHSQEQQAVRLSPP EEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCCCCCEEEECCC TTFLTTFQE CEEEEECCC >Mature Secondary Structure SNWEKTFGKRDLPTPPAWVNFFNPQQWQDFRQIVERYLKNLGLPVRPENQGFVVLADHA CCHHHHCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC GWSKDTRIGLSSLAQKCYAHPQSQWLAVITDHFEAMHKGFENEVLLQDEINDFESIRDLL CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHH AIRLWALEPELREKLIYREDLQDVCSVLVFDLPTTIRSVSSDEAMAWGKTNEELFAVALE HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEECCCCCHHHHHHHHH NLRGRELRLTEHELDDGINVLAITGDDFLIGSQSLLLEQYPQCVGRFGSLVAVPNRHVVL HCCCCEEEEHHHHHCCCCEEEEEECCCEEECCHHHHHHHHHHHHHHHCCEEECCCCCEEE CYPINEPIALEAWTSMLPVVEGMYRNGPGSISNQVFWYDNGAFTHLPHSQEQQAVRLSPP EEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCCCCCEEEECCC TTFLTTFQE CEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA