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The map label for this gene is arlR [H]

Identifier: 159900447

GI number: 159900447

Start: 4926240

End: 4926920

Strand: Direct

Name: arlR [H]

Synonym: Haur_3932

Alternate gene names: 159900447

Gene position: 4926240-4926920 (Clockwise)

Preceding gene: 159900446

Following gene: 159900448

Centisome position: 77.62

GC content: 52.86

Gene sequence:

>681_bases
ATGCGGGTGTTGCTAATTGAAGATGATCGCAAATTGGCCCGCTTGATCGAGCGAGCACTACGCGACGAACATCATCAGGT
CGATGTGGCTTACGAGGGCGATAGTGGCTTGGATATGGCGCTGCATGGCATGTATGATGTAGCGGTGATCGATTGGATGC
TGCCTGAGCGCGATGGCCCCAGCATTTGTCGGGCAATTCGCGCCGCCAAACTTACTACCAGCTTACTCTTATTGACCGCA
CGGAGCCAAATTGAAGATCGGGTTGCAGGCTTGGATAGCGGAGCCGACGATTATTTGAGCAAGCCGTTTGCCTTTGAGGA
ATTGTTGGCGCGAGTACGGGCTTTGGGGCGGCGCTTCAATAGCAATCTGAGCAGCGAAGAATTACGCTCAGGCGAGATTG
TGCTTGATCTGCGGGCGCACACGGCGCGGCGAGCCAATCAGCAACTCGATTTAACCGCCACCGAATGGAATTTGCTCGAA
TGTTTGATCCGCAATAGCAACCAAGCCCTAAGTCGCCAACAATTGCTCGATTATGTCTGGTCGTATGAGCGCGATGTTCA
ACCGTCAATGGTTGATGTCTATATCTCGTATTTGCGGCGCAAACTTGAGCAACCAACCAAACGTGACCCAATTCAAACCG
TGCGCGGGGTTGGCTATCGTTGGGTGAGCGACCATGCTTAA

Upstream 100 bases:

>100_bases
CGCAATTGCCTTGGTGGTTTTAACAGGCCATTATGGTGGTAAGCTGGTCTATGAGCATGGGATTGGCGTTTCATTGAGTG
CAATGCAATAAGGAACGAGC

Downstream 100 bases:

>100_bases
TCGATTGCGTTGGCGCTTAACCTTAATTTATGCTTGCACAGCCTTGCTGCTGTTGGCGGCAGTTGGCGGTAGCGTTTATT
GGATGACCGTGCGCTATTTT

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MRVLLIEDDRKLARLIERALRDEHHQVDVAYEGDSGLDMALHGMYDVAVIDWMLPERDGPSICRAIRAAKLTTSLLLLTA
RSQIEDRVAGLDSGADDYLSKPFAFEELLARVRALGRRFNSNLSSEELRSGEIVLDLRAHTARRANQQLDLTATEWNLLE
CLIRNSNQALSRQQLLDYVWSYERDVQPSMVDVYISYLRRKLEQPTKRDPIQTVRGVGYRWVSDHA

Sequences:

>Translated_226_residues
MRVLLIEDDRKLARLIERALRDEHHQVDVAYEGDSGLDMALHGMYDVAVIDWMLPERDGPSICRAIRAAKLTTSLLLLTA
RSQIEDRVAGLDSGADDYLSKPFAFEELLARVRALGRRFNSNLSSEELRSGEIVLDLRAHTARRANQQLDLTATEWNLLE
CLIRNSNQALSRQQLLDYVWSYERDVQPSMVDVYISYLRRKLEQPTKRDPIQTVRGVGYRWVSDHA
>Mature_226_residues
MRVLLIEDDRKLARLIERALRDEHHQVDVAYEGDSGLDMALHGMYDVAVIDWMLPERDGPSICRAIRAAKLTTSLLLLTA
RSQIEDRVAGLDSGADDYLSKPFAFEELLARVRALGRRFNSNLSSEELRSGEIVLDLRAHTARRANQQLDLTATEWNLLE
CLIRNSNQALSRQQLLDYVWSYERDVQPSMVDVYISYLRRKLEQPTKRDPIQTVRGVGYRWVSDHA

Specific function: Member of the two-component regulatory system ArlS/ArlR [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786784, Length=219, Percent_Identity=38.8127853881278, Blast_Score=160, Evalue=5e-41,
Organism=Escherichia coli, GI87082012, Length=226, Percent_Identity=38.4955752212389, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1789402, Length=219, Percent_Identity=39.7260273972603, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=33.7837837837838, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=34.9137931034483, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=34.3891402714932, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1790552, Length=224, Percent_Identity=35.2678571428571, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=34.2342342342342, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=37.8995433789954, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=34.9557522123894, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI2367329, Length=232, Percent_Identity=37.0689655172414, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1787229, Length=230, Percent_Identity=29.5652173913043, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790863, Length=234, Percent_Identity=29.4871794871795, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=29.6610169491525, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=29.9065420560748, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25981; Mature: 25981

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLIEDDRKLARLIERALRDEHHQVDVAYEGDSGLDMALHGMYDVAVIDWMLPERDGP
CEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCH
SICRAIRAAKLTTSLLLLTARSQIEDRVAGLDSGADDYLSKPFAFEELLARVRALGRRFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHC
SNLSSEELRSGEIVLDLRAHTARRANQQLDLTATEWNLLECLIRNSNQALSRQQLLDYVW
CCCCHHHHCCCCEEEEEHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHH
SYERDVQPSMVDVYISYLRRKLEQPTKRDPIQTVRGVGYRWVSDHA
HHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRVLLIEDDRKLARLIERALRDEHHQVDVAYEGDSGLDMALHGMYDVAVIDWMLPERDGP
CEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCH
SICRAIRAAKLTTSLLLLTARSQIEDRVAGLDSGADDYLSKPFAFEELLARVRALGRRFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHC
SNLSSEELRSGEIVLDLRAHTARRANQQLDLTATEWNLLECLIRNSNQALSRQQLLDYVW
CCCCHHHHCCCCEEEEEHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHH
SYERDVQPSMVDVYISYLRRKLEQPTKRDPIQTVRGVGYRWVSDHA
HHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA