| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159900418
Identifier: 159900418
GI number: 159900418
Start: 4894269
End: 4894787
Strand: Reverse
Name: 159900418
Synonym: Haur_3903
Alternate gene names: NA
Gene position: 4894787-4894269 (Counterclockwise)
Preceding gene: 159900419
Following gene: 159900417
Centisome position: 77.12
GC content: 50.48
Gene sequence:
>519_bases ATGCGTTTTCCCAAATCTCAAGCGTTACAACTGCATTCGTGCTTCGAAGAATTGATTCCAGGTCGCATGCATACGAGCGG CCAGCGCTTCTTGCCTTTAATTGTGCTCGGTTTCAAGCAAGTTCGCTTAGGCGTGGTTGATCGCCATAATCATGTGAATC AGTCCCACGCTGGGCGCTATGGAACGGCTCGGTTGGTATTTCAACTGAGCCGCGTCGCTTTGCAGCCAGCCGATACCCAA CGCATGGGCATCGAGCCAGAGGTTGGTAATGGACTGAGCACTATGCCTTTGGCTTATGGCTGCATCCAAGATTTAATAAC CTGGGAGCGGCGCGACGATTTGGGCTATGCAGTCAGCTATGTCGAGGCAATTATTGCTGTCGGCGTTGGCAGCATTGGCC TGCGCACAACCTTGACTGGCCAAAATGTGGCCAAATTACCTAACGAGCAACTACAAACTGGCGATTGGGTTGTGTTGAGC AATTCACGGATTGATATTTTAGGTTTTGAGCCTGATTAG
Upstream 100 bases:
>100_bases ATGGCTATCAATCAGGGATGGTACGCTTTTGCTTTGCCAAAAAGCCCGAAACAATTGCTGCCGCCGCTGAAAAACTCAAG CAATTAGGGAGTCGAAGCTA
Downstream 100 bases:
>100_bases GAATCATTTTTAACCACGAAGAACACGAAGAGCACGAAGGGCGATATGGCTATAGACTCTGGGCTATCGGAACAACTATT GGTATTTCCAGCCAATCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MRFPKSQALQLHSCFEELIPGRMHTSGQRFLPLIVLGFKQVRLGVVDRHNHVNQSHAGRYGTARLVFQLSRVALQPADTQ RMGIEPEVGNGLSTMPLAYGCIQDLITWERRDDLGYAVSYVEAIIAVGVGSIGLRTTLTGQNVAKLPNEQLQTGDWVVLS NSRIDILGFEPD
Sequences:
>Translated_172_residues MRFPKSQALQLHSCFEELIPGRMHTSGQRFLPLIVLGFKQVRLGVVDRHNHVNQSHAGRYGTARLVFQLSRVALQPADTQ RMGIEPEVGNGLSTMPLAYGCIQDLITWERRDDLGYAVSYVEAIIAVGVGSIGLRTTLTGQNVAKLPNEQLQTGDWVVLS NSRIDILGFEPD >Mature_172_residues MRFPKSQALQLHSCFEELIPGRMHTSGQRFLPLIVLGFKQVRLGVVDRHNHVNQSHAGRYGTARLVFQLSRVALQPADTQ RMGIEPEVGNGLSTMPLAYGCIQDLITWERRDDLGYAVSYVEAIIAVGVGSIGLRTTLTGQNVAKLPNEQLQTGDWVVLS NSRIDILGFEPD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19054; Mature: 19054
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFPKSQALQLHSCFEELIPGRMHTSGQRFLPLIVLGFKQVRLGVVDRHNHVNQSHAGRY CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GTARLVFQLSRVALQPADTQRMGIEPEVGNGLSTMPLAYGCIQDLITWERRDDLGYAVSY HHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH VEAIIAVGVGSIGLRTTLTGQNVAKLPNEQLQTGDWVVLSNSRIDILGFEPD HHHHHHHCCCCCCEEEEECCCCHHHCCCCCCCCCCEEEEECCEEEEEECCCC >Mature Secondary Structure MRFPKSQALQLHSCFEELIPGRMHTSGQRFLPLIVLGFKQVRLGVVDRHNHVNQSHAGRY CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GTARLVFQLSRVALQPADTQRMGIEPEVGNGLSTMPLAYGCIQDLITWERRDDLGYAVSY HHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH VEAIIAVGVGSIGLRTTLTGQNVAKLPNEQLQTGDWVVLSNSRIDILGFEPD HHHHHHHCCCCCCEEEEECCCCHHHCCCCCCCCCCEEEEECCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA