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The map label for this gene is ydeP [H]

Identifier: 159900410

GI number: 159900410

Start: 4887910

End: 4888272

Strand: Direct

Name: ydeP [H]

Synonym: Haur_3895

Alternate gene names: 159900410

Gene position: 4887910-4888272 (Clockwise)

Preceding gene: 159900407

Following gene: 159900421

Centisome position: 77.02

GC content: 48.76

Gene sequence:

>363_bases
ATGTGTCACAATTTTGAATCAGGCTATTCATGCCCAGTTGAGGCGACAATTGCGGTAATTGGTGGTAAGTGGAAGTGTGT
GATTTTGTTTCATCTCTGCGATGGCAAGAAACGGTTTAGCCAATTGCAGCGCTTCTTACCATCAATTACGCAGCGCATGT
TAACCCTACAATTGCGTGAACTTGAGGCCGATGGGGTAATTACGCGCACGGTCTACCCCGAAGTGCCACCACGAGTCGAA
TATGCGCTGACCGATTTTGGCGAAAGTTTGCGGCCAATTTTGTTTTTGATGCGTGATTGGGGTCAGGAATATCGCGAGGC
GGTTGCCACGACCAAAGCGCGGCAAGCAACTCTCGCTAATTAA

Upstream 100 bases:

>100_bases
TTGCGCTTAGTATAAAGCGTGCTATGATTTTGACAAGAACGCACAATTTTGTCGGGTACTAACAATTTTGATACTATTGG
ATTATAAAGGGCTAAATCGT

Downstream 100 bases:

>100_bases
GGATTACTTAGCTTGCAACAAACGCCGATAGGTTTGCAAGGCAAGGGGAATGCGCGGGCCATACCAGGTCAATAACTGGC
CATCGCAGCACGTAATTTGT

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MCHNFESGYSCPVEATIAVIGGKWKCVILFHLCDGKKRFSQLQRFLPSITQRMLTLQLRELEADGVITRTVYPEVPPRVE
YALTDFGESLRPILFLMRDWGQEYREAVATTKARQATLAN

Sequences:

>Translated_120_residues
MCHNFESGYSCPVEATIAVIGGKWKCVILFHLCDGKKRFSQLQRFLPSITQRMLTLQLRELEADGVITRTVYPEVPPRVE
YALTDFGESLRPILFLMRDWGQEYREAVATTKARQATLAN
>Mature_120_residues
MCHNFESGYSCPVEATIAVIGGKWKCVILFHLCDGKKRFSQLQRFLPSITQRMLTLQLRELEADGVITRTVYPEVPPRVE
YALTDFGESLRPILFLMRDWGQEYREAVATTKARQATLAN

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=90, Percent_Identity=37.7777777777778, Blast_Score=76, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13739; Mature: 13739

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCHNFESGYSCPVEATIAVIGGKWKCVILFHLCDGKKRFSQLQRFLPSITQRMLTLQLRE
CCCCCCCCCCCCHHHEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LEADGVITRTVYPEVPPRVEYALTDFGESLRPILFLMRDWGQEYREAVATTKARQATLAN
HCCCCEEEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCHNFESGYSCPVEATIAVIGGKWKCVILFHLCDGKKRFSQLQRFLPSITQRMLTLQLRE
CCCCCCCCCCCCHHHEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LEADGVITRTVYPEVPPRVEYALTDFGESLRPILFLMRDWGQEYREAVATTKARQATLAN
HCCCCEEEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]