Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159900402

Identifier: 159900402

GI number: 159900402

Start: 4881269

End: 4882222

Strand: Reverse

Name: 159900402

Synonym: Haur_3887

Alternate gene names: NA

Gene position: 4882222-4881269 (Counterclockwise)

Preceding gene: 159900403

Following gene: 159900401

Centisome position: 76.93

GC content: 45.07

Gene sequence:

>954_bases
ATGTTACGACGGATGTTGGTATTGTTGGTTTTGGTGGGGTTAGTCGCTTGTGGCACAAACGAGCAAGCCGCCACCAACAG
CGAAAGCCTGACGCTTAAATTGAATGTTCAGCCAAATCAAACCTATCGCTATACATCAACCCAAGTGCAACATACAACCC
AAAGCATGTTTGGCACTGAACAAACCCAAGTGACTACGACCACGATGGCAATGCAGCAAAATATCATTTCGGTCTCAGCC
GAAGGTGAAACCGTGATGCAGGTTATGATCGATTCGATTCGGGTTGAAAGCCAAACCGCTGATCAAACCATGACCTACGA
TTCAACTGATCCAGCTGCCAGCACCGATTCACCAGAGTTAGCCCAATTTGCTGGCATGACCGGCCAACCAATCACGATTA
CCCTAAGCCCAGAAGCATCGGTTAACAAGATCGATGGCATGGATCAATGGATCGACAAGATGCTCGGTGAGAATGAAATC
ACGCCTGAAGTTGCCATGATGCGCGATATGCTGACCAAAACACTTGAGCAAAGCTATGCTAAAGCCACAATTATTCCATT
TGGTGGTAAACCTATGGTGATTGGCGATTCATGGCAAGATGTAACCGATCTGAATTTGCAAATTTTCTCGATGGTTTTGA
CCAATACCTATACCTTGAAAGAACGTAACGCGGGCTTGGCAACCTTTGATCTGACTGGCGATTTTGCCTTAGGCGAATTC
AACTTTCCAGGCTTGGCCGAAGATGAAAATATCAAAATGACGATTGAAAATGGTAAAAACGGCAATACCCAAAAGGGTGT
TGTGGTGATTGATGAAAAAACTGGGATGTTGAAATCGAACGTCTTTGATCAAACGATGTCAGTCATTATGAAGCTTGAAG
GTGAAGATGCTGGCCAATCGTTGGCTGTGCCAATCGAGCAAACAGTGCATATGGATGTCCAATTGCAACCATAA

Upstream 100 bases:

>100_bases
AGGCTGAACTATTGCGCTAAAAATCGAGTATAGTTAGTACGATTAGATGCCAAGATCGGCGAGAGCGATCTTGGATTTTT
AGTGCAATTGAGGCCGCTTT

Downstream 100 bases:

>100_bases
CATCAGCTTTTTCTCAGATGCGATTAAGTTGGCTATCGTGGTGAATTGATCAGGAGCGTGCTATAACCAAGGCACGCTTT
TTTGATTTGAGGAGTTTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTEQTQVTTTTMAMQQNIISVSA
EGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPELAQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEI
TPEVAMMRDMLTKTLEQSYAKATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF
NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQSLAVPIEQTVHMDVQLQP

Sequences:

>Translated_317_residues
MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTEQTQVTTTTMAMQQNIISVSA
EGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPELAQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEI
TPEVAMMRDMLTKTLEQSYAKATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF
NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQSLAVPIEQTVHMDVQLQP
>Mature_317_residues
MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTEQTQVTTTTMAMQQNIISVSA
EGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPELAQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEI
TPEVAMMRDMLTKTLEQSYAKATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF
NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQSLAVPIEQTVHMDVQLQP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34737; Mature: 34737

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTE
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHCCC
QTQVTTTTMAMQQNIISVSAEGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPEL
CCEEEHHHHHHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHH
AQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEITPEVAMMRDMLTKTLEQSYA
HHHCCCCCCCEEEEECCCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
KATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF
EEEEEECCCCEEEECCCCCCCHHCHHHHHHHHHHCEEEEEECCCCEEEEEECCCEEECCC
NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQS
CCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCE
LAVPIEQTVHMDVQLQP
EEEEHHHEEEEEEEECC
>Mature Secondary Structure
MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTE
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHCCC
QTQVTTTTMAMQQNIISVSAEGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPEL
CCEEEHHHHHHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHH
AQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEITPEVAMMRDMLTKTLEQSYA
HHHCCCCCCCEEEEECCCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
KATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF
EEEEEECCCCEEEECCCCCCCHHCHHHHHHHHHHCEEEEEECCCCEEEEEECCCEEECCC
NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQS
CCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCE
LAVPIEQTVHMDVQLQP
EEEEHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA