| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900402
Identifier: 159900402
GI number: 159900402
Start: 4881269
End: 4882222
Strand: Reverse
Name: 159900402
Synonym: Haur_3887
Alternate gene names: NA
Gene position: 4882222-4881269 (Counterclockwise)
Preceding gene: 159900403
Following gene: 159900401
Centisome position: 76.93
GC content: 45.07
Gene sequence:
>954_bases ATGTTACGACGGATGTTGGTATTGTTGGTTTTGGTGGGGTTAGTCGCTTGTGGCACAAACGAGCAAGCCGCCACCAACAG CGAAAGCCTGACGCTTAAATTGAATGTTCAGCCAAATCAAACCTATCGCTATACATCAACCCAAGTGCAACATACAACCC AAAGCATGTTTGGCACTGAACAAACCCAAGTGACTACGACCACGATGGCAATGCAGCAAAATATCATTTCGGTCTCAGCC GAAGGTGAAACCGTGATGCAGGTTATGATCGATTCGATTCGGGTTGAAAGCCAAACCGCTGATCAAACCATGACCTACGA TTCAACTGATCCAGCTGCCAGCACCGATTCACCAGAGTTAGCCCAATTTGCTGGCATGACCGGCCAACCAATCACGATTA CCCTAAGCCCAGAAGCATCGGTTAACAAGATCGATGGCATGGATCAATGGATCGACAAGATGCTCGGTGAGAATGAAATC ACGCCTGAAGTTGCCATGATGCGCGATATGCTGACCAAAACACTTGAGCAAAGCTATGCTAAAGCCACAATTATTCCATT TGGTGGTAAACCTATGGTGATTGGCGATTCATGGCAAGATGTAACCGATCTGAATTTGCAAATTTTCTCGATGGTTTTGA CCAATACCTATACCTTGAAAGAACGTAACGCGGGCTTGGCAACCTTTGATCTGACTGGCGATTTTGCCTTAGGCGAATTC AACTTTCCAGGCTTGGCCGAAGATGAAAATATCAAAATGACGATTGAAAATGGTAAAAACGGCAATACCCAAAAGGGTGT TGTGGTGATTGATGAAAAAACTGGGATGTTGAAATCGAACGTCTTTGATCAAACGATGTCAGTCATTATGAAGCTTGAAG GTGAAGATGCTGGCCAATCGTTGGCTGTGCCAATCGAGCAAACAGTGCATATGGATGTCCAATTGCAACCATAA
Upstream 100 bases:
>100_bases AGGCTGAACTATTGCGCTAAAAATCGAGTATAGTTAGTACGATTAGATGCCAAGATCGGCGAGAGCGATCTTGGATTTTT AGTGCAATTGAGGCCGCTTT
Downstream 100 bases:
>100_bases CATCAGCTTTTTCTCAGATGCGATTAAGTTGGCTATCGTGGTGAATTGATCAGGAGCGTGCTATAACCAAGGCACGCTTT TTTGATTTGAGGAGTTTGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTEQTQVTTTTMAMQQNIISVSA EGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPELAQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEI TPEVAMMRDMLTKTLEQSYAKATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQSLAVPIEQTVHMDVQLQP
Sequences:
>Translated_317_residues MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTEQTQVTTTTMAMQQNIISVSA EGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPELAQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEI TPEVAMMRDMLTKTLEQSYAKATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQSLAVPIEQTVHMDVQLQP >Mature_317_residues MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTEQTQVTTTTMAMQQNIISVSA EGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPELAQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEI TPEVAMMRDMLTKTLEQSYAKATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQSLAVPIEQTVHMDVQLQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34737; Mature: 34737
Theoretical pI: Translated: 4.06; Mature: 4.06
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 6.6 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 6.6 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTE CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHCCC QTQVTTTTMAMQQNIISVSAEGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPEL CCEEEHHHHHHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHH AQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEITPEVAMMRDMLTKTLEQSYA HHHCCCCCCCEEEEECCCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC KATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF EEEEEECCCCEEEECCCCCCCHHCHHHHHHHHHHCEEEEEECCCCEEEEEECCCEEECCC NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQS CCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCE LAVPIEQTVHMDVQLQP EEEEHHHEEEEEEEECC >Mature Secondary Structure MLRRMLVLLVLVGLVACGTNEQAATNSESLTLKLNVQPNQTYRYTSTQVQHTTQSMFGTE CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHCCC QTQVTTTTMAMQQNIISVSAEGETVMQVMIDSIRVESQTADQTMTYDSTDPAASTDSPEL CCEEEHHHHHHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHH AQFAGMTGQPITITLSPEASVNKIDGMDQWIDKMLGENEITPEVAMMRDMLTKTLEQSYA HHHCCCCCCCEEEEECCCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC KATIIPFGGKPMVIGDSWQDVTDLNLQIFSMVLTNTYTLKERNAGLATFDLTGDFALGEF EEEEEECCCCEEEECCCCCCCHHCHHHHHHHHHHCEEEEEECCCCEEEEEECCCEEECCC NFPGLAEDENIKMTIENGKNGNTQKGVVVIDEKTGMLKSNVFDQTMSVIMKLEGEDAGQS CCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCE LAVPIEQTVHMDVQLQP EEEEHHHEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA