Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159900401

Identifier: 159900401

GI number: 159900401

Start: 4879979

End: 4881169

Strand: Reverse

Name: 159900401

Synonym: Haur_3886

Alternate gene names: NA

Gene position: 4881169-4879979 (Counterclockwise)

Preceding gene: 159900402

Following gene: 159900398

Centisome position: 76.91

GC content: 50.38

Gene sequence:

>1191_bases
ATGCACATACGTTTATTCAGTGGTCTGCTGAGCTTGTTGCTTGTGGCTGGATGTGGCAGCCAAGCAGCTCAGCCGACGAT
TACGCCACCGCCAACCCTGACCACTGCCGCCCAAGTTGAGGTGATTGCTACCGCAAGTTTAGCTCCGAACGAGCCAACCG
CCGAGCTTGCTACACCAACGCTTGACGACCCCAACGCCTTGGTTGATACTTCGATGCTCACGGGCCGAATCTATTTTATC
GATCCCTTGGGATTTGCAATTAACTCAATCACGCCAACTGGTGGTGATTTGCAAACGGCCTACAAAGAACAAGGATCATT
GCCATTATCGCGCTTGGGAATCGACCCCAGCCTGCATTATTTGAGTGTGTTCAAAGGCGATTTTTTGCATATTTACACCA
CCGATTTTCAAGAGCTTTTGCGCTTGCCCAGTAGCTTTGAGCCAATTTGGTCGCCGCGCGGCGATGGCAAATTTGCCCTG
CTGAAATTAACCGATATGGGCGAAGCCTTTGTTGATGTGTATGATTTGAATAGTGCTACGCCCGCCAGTACCGTGGTGAG
CACGATTGGTTATCGTGCTGCTTGGCTCAGCGATGGGCTTGGGCTGCTGGTGCACAATGGCAATCAAATTGGCACAGCCA
ACCTTGATGATGGTGCATTTAGTCCAATACTTGAGCTAGTGGAAGATGAACATGGCACTTGGGCGGTTGATGAACTTTTG
AGCTATGCCGACCAAATCTATTTTCATGGTGGTCAAGTTAATTTGCTGGGAGCATCGGGCAATGGCATGCAATGGTGGGC
CGTGGTTGATGGTGCTCCCCAAGCCGTGACCGACATAGGCGGCAATGGGATTTTGCGGTTGCAATTTAACCAAGAGCGTG
AGCAAATCGCCTTTATTGATAATTTTCATATTAGTGCTTGTTTGGGTGCACAAGTGTTGAGCGTGCAGGCTCCAGATTTT
AGTGCACCAGCCCGTAATCCCAATTTAAGCCCAATTTTGGCCGATAATGGGCAAGCAATTCATGGAGCAGCATGGAACCC
AACGGGCGATTGGCTGACCTTTGCCAAGGGCGATTACAGCTGTGATGAGGCTGGGCCAATCTATGCAACGCCGCAGGTTC
TGGTGTGGAATCCAGCAACCCAGGCAATCCAAGCCTTTGAATATGGTAGCTATCCCGTCTGGATTCCATAG

Upstream 100 bases:

>100_bases
ACATCAGCTTTTTCTCAGATGCGATTAAGTTGGCTATCGTGGTGAATTGATCAGGAGCGTGCTATAACCAAGGCACGCTT
TTTTGATTTGAGGAGTTTGT

Downstream 100 bases:

>100_bases
AATTTTTGATCCACGAAGGACACGAAGAGCACGAAGGAATTGAGCTTAGCGATCCTTCGCGCTCTTCGTGGTTAAAAATC
TGACCCCTGACCCGCTTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MHIRLFSGLLSLLLVAGCGSQAAQPTITPPPTLTTAAQVEVIATASLAPNEPTAELATPTLDDPNALVDTSMLTGRIYFI
DPLGFAINSITPTGGDLQTAYKEQGSLPLSRLGIDPSLHYLSVFKGDFLHIYTTDFQELLRLPSSFEPIWSPRGDGKFAL
LKLTDMGEAFVDVYDLNSATPASTVVSTIGYRAAWLSDGLGLLVHNGNQIGTANLDDGAFSPILELVEDEHGTWAVDELL
SYADQIYFHGGQVNLLGASGNGMQWWAVVDGAPQAVTDIGGNGILRLQFNQEREQIAFIDNFHISACLGAQVLSVQAPDF
SAPARNPNLSPILADNGQAIHGAAWNPTGDWLTFAKGDYSCDEAGPIYATPQVLVWNPATQAIQAFEYGSYPVWIP

Sequences:

>Translated_396_residues
MHIRLFSGLLSLLLVAGCGSQAAQPTITPPPTLTTAAQVEVIATASLAPNEPTAELATPTLDDPNALVDTSMLTGRIYFI
DPLGFAINSITPTGGDLQTAYKEQGSLPLSRLGIDPSLHYLSVFKGDFLHIYTTDFQELLRLPSSFEPIWSPRGDGKFAL
LKLTDMGEAFVDVYDLNSATPASTVVSTIGYRAAWLSDGLGLLVHNGNQIGTANLDDGAFSPILELVEDEHGTWAVDELL
SYADQIYFHGGQVNLLGASGNGMQWWAVVDGAPQAVTDIGGNGILRLQFNQEREQIAFIDNFHISACLGAQVLSVQAPDF
SAPARNPNLSPILADNGQAIHGAAWNPTGDWLTFAKGDYSCDEAGPIYATPQVLVWNPATQAIQAFEYGSYPVWIP
>Mature_396_residues
MHIRLFSGLLSLLLVAGCGSQAAQPTITPPPTLTTAAQVEVIATASLAPNEPTAELATPTLDDPNALVDTSMLTGRIYFI
DPLGFAINSITPTGGDLQTAYKEQGSLPLSRLGIDPSLHYLSVFKGDFLHIYTTDFQELLRLPSSFEPIWSPRGDGKFAL
LKLTDMGEAFVDVYDLNSATPASTVVSTIGYRAAWLSDGLGLLVHNGNQIGTANLDDGAFSPILELVEDEHGTWAVDELL
SYADQIYFHGGQVNLLGASGNGMQWWAVVDGAPQAVTDIGGNGILRLQFNQEREQIAFIDNFHISACLGAQVLSVQAPDF
SAPARNPNLSPILADNGQAIHGAAWNPTGDWLTFAKGDYSCDEAGPIYATPQVLVWNPATQAIQAFEYGSYPVWIP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42390; Mature: 42390

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIRLFSGLLSLLLVAGCGSQAAQPTITPPPTLTTAAQVEVIATASLAPNEPTAELATPT
CEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHCCCC
LDDPNALVDTSMLTGRIYFIDPLGFAINSITPTGGDLQTAYKEQGSLPLSRLGIDPSLHY
CCCCCCEEECHHHEEEEEEECCCCHHHHCCCCCCCCHHHHHHHCCCCCHHHHCCCCCHHE
LSVFKGDFLHIYTTDFQELLRLPSSFEPIWSPRGDGKFALLKLTDMGEAFVDVYDLNSAT
EEEECCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCC
PASTVVSTIGYRAAWLSDGLGLLVHNGNQIGTANLDDGAFSPILELVEDEHGTWAVDELL
CHHHHHHHHCHHHHHHCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHH
SYADQIYFHGGQVNLLGASGNGMQWWAVVDGAPQAVTDIGGNGILRLQFNQEREQIAFID
HHHHHEEEECCEEEEEECCCCCEEEEEEECCCCHHHHHCCCCCEEEEEECCCCCEEEEEE
NFHISACLGAQVLSVQAPDFSAPARNPNLSPILADNGQAIHGAAWNPTGDWLTFAKGDYS
CCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCEEEEECCCCC
CDEAGPIYATPQVLVWNPATQAIQAFEYGSYPVWIP
CCCCCCEEECCEEEEECCHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MHIRLFSGLLSLLLVAGCGSQAAQPTITPPPTLTTAAQVEVIATASLAPNEPTAELATPT
CEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHCCCC
LDDPNALVDTSMLTGRIYFIDPLGFAINSITPTGGDLQTAYKEQGSLPLSRLGIDPSLHY
CCCCCCEEECHHHEEEEEEECCCCHHHHCCCCCCCCHHHHHHHCCCCCHHHHCCCCCHHE
LSVFKGDFLHIYTTDFQELLRLPSSFEPIWSPRGDGKFALLKLTDMGEAFVDVYDLNSAT
EEEECCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCC
PASTVVSTIGYRAAWLSDGLGLLVHNGNQIGTANLDDGAFSPILELVEDEHGTWAVDELL
CHHHHHHHHCHHHHHHCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHH
SYADQIYFHGGQVNLLGASGNGMQWWAVVDGAPQAVTDIGGNGILRLQFNQEREQIAFID
HHHHHEEEECCEEEEEECCCCCEEEEEEECCCCHHHHHCCCCCEEEEEECCCCCEEEEEE
NFHISACLGAQVLSVQAPDFSAPARNPNLSPILADNGQAIHGAAWNPTGDWLTFAKGDYS
CCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCEEEEECCCCC
CDEAGPIYATPQVLVWNPATQAIQAFEYGSYPVWIP
CCCCCCEEECCEEEEECCHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA