Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

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The map label for this gene is ygfF [C]

Identifier: 159900347

GI number: 159900347

Start: 4809220

End: 4810077

Strand: Direct

Name: ygfF [C]

Synonym: Haur_3830

Alternate gene names: 159900347

Gene position: 4809220-4810077 (Clockwise)

Preceding gene: 159900346

Following gene: 159900349

Centisome position: 75.78

GC content: 48.95

Gene sequence:

>858_bases
ATGAAAGGTAAAGTTTGTTTGGTCACCGGGGCTACTGGTGGTATCGGCAAGGTAACAGCCTTAGAACTAGCGCGTCAAGG
CGCGACGGTCGTGATTATTGGGCGGCATCCGTTGCGCACCGAAGGCGTTACCGAGATGATCAAACGCGAAACTGGCAATC
CCAATGTTAGCTATATTTTGGCCGATTTATCCAAGCAAGTTGATGTACGCAGGGCTGCCGCCGAATTTTTGAGCAAACAT
CATCAATTGCATATTTTGGTCAATAATGCTGGAGCATTTTATAACTCACGCCAAGAAAGTGCCGATGGCATCGAATTAAC
CATGGCGCTCAATCATTTAGCCTACTTTCTATTAACCGATTTGCTGTTGGATACAATCAAAGCTAGCGCTCCTGCCCGAA
TTATCAATGTTTCTTCTGAGGCTCATCGGATGGGCGCGATGGATTTCAACGATCTTGAAGGCAAGCGCAAATGGGGTGGC
TGGCGCATGTATGGTCGTTCCAAATTGGCCAATATTCTATTTACCAAAGAGCTTGCCCGCCGTTTGGCAGGCACCGATGT
CACGGTCAACTGCTTGCATCCAGGCGTGGTTTCAACCGGCTTTGCTGCCAACAACGGATTCTTTGGCATTGCCATGCGCA
AATTAATGGATCTTGGCTCGATCAGCGCCGAAAAAGGGGCCGAAACCACCTTGTATCTTGCCACATCGCACGAAGTTGAG
CATCTCACGGGCTTGTATTTCGATAAAAAGAAACCACGTGAATCCAGCCCAGCCTCGCACGATCAAACTGCCGCCGAAAA
GCTCTGGCAGTGGAGCGAAACCAAAGTTAAGCAAATCAACGAGCAACAAGCAGCGTAA

Upstream 100 bases:

>100_bases
GGCATTTTGTTTTAGCGTTTGTTGCCATGGCTTGACACACTGCGTAAATCGGGGCATCCTGCTAGTAGCACATGTAATTT
GTGGCTTTTATGGAGGCACT

Downstream 100 bases:

>100_bases
AAAGGGATGCGGGATGAAAGCTGTGGCTATAGGTAGGTTTTAACGATCCCTCACCCCCGACCCCTCTCTTACAAGGGTAG
GTTGTTAACAATGCTTGGGT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKGKVCLVTGATGGIGKVTALELARQGATVVIIGRHPLRTEGVTEMIKRETGNPNVSYILADLSKQVDVRRAAAEFLSKH
HQLHILVNNAGAFYNSRQESADGIELTMALNHLAYFLLTDLLLDTIKASAPARIINVSSEAHRMGAMDFNDLEGKRKWGG
WRMYGRSKLANILFTKELARRLAGTDVTVNCLHPGVVSTGFAANNGFFGIAMRKLMDLGSISAEKGAETTLYLATSHEVE
HLTGLYFDKKKPRESSPASHDQTAAEKLWQWSETKVKQINEQQAA

Sequences:

>Translated_285_residues
MKGKVCLVTGATGGIGKVTALELARQGATVVIIGRHPLRTEGVTEMIKRETGNPNVSYILADLSKQVDVRRAAAEFLSKH
HQLHILVNNAGAFYNSRQESADGIELTMALNHLAYFLLTDLLLDTIKASAPARIINVSSEAHRMGAMDFNDLEGKRKWGG
WRMYGRSKLANILFTKELARRLAGTDVTVNCLHPGVVSTGFAANNGFFGIAMRKLMDLGSISAEKGAETTLYLATSHEVE
HLTGLYFDKKKPRESSPASHDQTAAEKLWQWSETKVKQINEQQAA
>Mature_285_residues
MKGKVCLVTGATGGIGKVTALELARQGATVVIIGRHPLRTEGVTEMIKRETGNPNVSYILADLSKQVDVRRAAAEFLSKH
HQLHILVNNAGAFYNSRQESADGIELTMALNHLAYFLLTDLLLDTIKASAPARIINVSSEAHRMGAMDFNDLEGKRKWGG
WRMYGRSKLANILFTKELARRLAGTDVTVNCLHPGVVSTGFAANNGFFGIAMRKLMDLGSISAEKGAETTLYLATSHEVE
HLTGLYFDKKKPRESSPASHDQTAAEKLWQWSETKVKQINEQQAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI186928839, Length=272, Percent_Identity=42.6470588235294, Blast_Score=192, Evalue=2e-49,
Organism=Homo sapiens, GI10190746, Length=293, Percent_Identity=40.9556313993174, Blast_Score=191, Evalue=5e-49,
Organism=Homo sapiens, GI225579078, Length=279, Percent_Identity=42.2939068100358, Blast_Score=187, Evalue=7e-48,
Organism=Homo sapiens, GI166795268, Length=275, Percent_Identity=41.4545454545455, Blast_Score=180, Evalue=1e-45,
Organism=Homo sapiens, GI146231950, Length=279, Percent_Identity=40.1433691756272, Blast_Score=168, Evalue=5e-42,
Organism=Homo sapiens, GI7706523, Length=285, Percent_Identity=36.8421052631579, Blast_Score=157, Evalue=7e-39,
Organism=Homo sapiens, GI19923931, Length=238, Percent_Identity=41.1764705882353, Blast_Score=153, Evalue=2e-37,
Organism=Homo sapiens, GI193804850, Length=276, Percent_Identity=36.5942028985507, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI13375997, Length=202, Percent_Identity=26.7326732673267, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI72534732, Length=161, Percent_Identity=26.7080745341615, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI142976729, Length=210, Percent_Identity=30.4761904761905, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI4557649, Length=202, Percent_Identity=30.6930693069307, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI32483357, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI2367175, Length=258, Percent_Identity=29.0697674418605, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787526, Length=263, Percent_Identity=27.3764258555133, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17558006, Length=282, Percent_Identity=35.1063829787234, Blast_Score=145, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17532805, Length=290, Percent_Identity=33.448275862069, Blast_Score=135, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI193207620, Length=290, Percent_Identity=31.0344827586207, Blast_Score=131, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17532791, Length=287, Percent_Identity=32.0557491289199, Blast_Score=128, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI71992402, Length=293, Percent_Identity=30.0341296928328, Blast_Score=117, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI72001364, Length=290, Percent_Identity=32.7586206896552, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17535059, Length=294, Percent_Identity=30.2721088435374, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI32565532, Length=212, Percent_Identity=31.6037735849057, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI115533172, Length=276, Percent_Identity=31.8840579710145, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI115533174, Length=276, Percent_Identity=31.5217391304348, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17505416, Length=287, Percent_Identity=27.1777003484321, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=225, Percent_Identity=35.5555555555556, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=211, Percent_Identity=30.8056872037915, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=212, Percent_Identity=32.5471698113208, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=224, Percent_Identity=32.5892857142857, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=205, Percent_Identity=32.1951219512195, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=208, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=221, Percent_Identity=31.2217194570136, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=208, Percent_Identity=30.2884615384615, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=211, Percent_Identity=28.436018957346, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=216, Percent_Identity=32.4074074074074, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=222, Percent_Identity=28.3783783783784, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=253, Percent_Identity=24.901185770751, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=208, Percent_Identity=29.3269230769231, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=219, Percent_Identity=29.6803652968037, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=228, Percent_Identity=29.8245614035088, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324820, Length=315, Percent_Identity=26.984126984127, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=205, Percent_Identity=27.8048780487805, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24586328, Length=276, Percent_Identity=43.8405797101449, Blast_Score=203, Evalue=8e-53,
Organism=Drosophila melanogaster, GI22024069, Length=276, Percent_Identity=42.7536231884058, Blast_Score=195, Evalue=2e-50,
Organism=Drosophila melanogaster, GI19921754, Length=276, Percent_Identity=42.0289855072464, Blast_Score=192, Evalue=2e-49,
Organism=Drosophila melanogaster, GI28573296, Length=276, Percent_Identity=42.3913043478261, Blast_Score=191, Evalue=5e-49,
Organism=Drosophila melanogaster, GI45553409, Length=279, Percent_Identity=40.1433691756272, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI24647948, Length=279, Percent_Identity=40.1433691756272, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI24647946, Length=279, Percent_Identity=40.1433691756272, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI161076371, Length=280, Percent_Identity=40.7142857142857, Blast_Score=183, Evalue=1e-46,
Organism=Drosophila melanogaster, GI45554248, Length=279, Percent_Identity=39.7849462365591, Blast_Score=152, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24640117, Length=279, Percent_Identity=39.7849462365591, Blast_Score=152, Evalue=2e-37,
Organism=Drosophila melanogaster, GI20129347, Length=292, Percent_Identity=31.1643835616438, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24647931, Length=296, Percent_Identity=31.4189189189189, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24656154, Length=276, Percent_Identity=28.2608695652174, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI19922628, Length=276, Percent_Identity=28.2608695652174, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644339, Length=218, Percent_Identity=31.651376146789, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21357041, Length=205, Percent_Identity=33.1707317073171, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571526, Length=201, Percent_Identity=31.8407960199005, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI23397609, Length=209, Percent_Identity=32.5358851674641, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643142, Length=207, Percent_Identity=33.8164251207729, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355319, Length=208, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31248; Mature: 31248

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MKGKVCLVTGATGGIGKVTALELARQGATVVIIGRHPLRTEGVTEMIKRETGNPNVSYIL
CCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
ADLSKQVDVRRAAAEFLSKHHQLHILVNNAGAFYNSRQESADGIELTMALNHLAYFLLTD
EHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH
LLLDTIKASAPARIINVSSEAHRMGAMDFNDLEGKRKWGGWRMYGRSKLANILFTKELAR
HHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
RLAGTDVTVNCLHPGVVSTGFAANNGFFGIAMRKLMDLGSISAEKGAETTLYLATSHEVE
HHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHH
HLTGLYFDKKKPRESSPASHDQTAAEKLWQWSETKVKQINEQQAA
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKGKVCLVTGATGGIGKVTALELARQGATVVIIGRHPLRTEGVTEMIKRETGNPNVSYIL
CCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
ADLSKQVDVRRAAAEFLSKHHQLHILVNNAGAFYNSRQESADGIELTMALNHLAYFLLTD
EHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH
LLLDTIKASAPARIINVSSEAHRMGAMDFNDLEGKRKWGGWRMYGRSKLANILFTKELAR
HHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
RLAGTDVTVNCLHPGVVSTGFAANNGFFGIAMRKLMDLGSISAEKGAETTLYLATSHEVE
HHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHH
HLTGLYFDKKKPRESSPASHDQTAAEKLWQWSETKVKQINEQQAA
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]