Click here to switch to the map view.

The map label for this gene is dapB [H]

Identifier: 159900197

GI number: 159900197

Start: 4623268

End: 4624071

Strand: Direct

Name: dapB [H]

Synonym: Haur_3680

Alternate gene names: 159900197

Gene position: 4623268-4624071 (Clockwise)

Preceding gene: 159900196

Following gene: 159900199

Centisome position: 72.85

GC content: 52.61

Gene sequence:

>804_bases
ATGTCAATTCGAGTATGTTTAGCTGGGGCTACGGGCTGGGCTGGTTCAGCACTGGCTCAAGGCATTGCCAAAACCAACGA
TTTGCGCTTGGTAGCGGCGGTTTCACGCAGCCACGCTGGCCAACAGGTGGGAGTTGTGTTGAACCAGCCTGAGCTGGATT
GCCCAATATTCGCTACTGCCGAAGAGGCGCTTAGCCAGCCCTGCGATGTTTTTGTCGAATACACCAAACCTGCTGTGGCC
CTTGATAATGTGTTGAAAGCCTTGGCAAGCGGAGCGCATGTGGTCATTGGTACATCGGGTTTGGATGATCCAGCCTATGC
CACAATTAACGAAGCAGCCTTGAAAGCTCAACGAGGCGTGCTAGCGGTCGGCAACTTTGCATTAACCGTCGTCTTATTGC
AAAAATTTGCCACAATTGCGGCGCGTTACATTCCGCACAGCGAAATCATCGATTACGCCAGCGACAAGAAAATTGATGCG
CCTAGCGGCACAGCCCGTGAATTAGCGTATCGGCTCGGCCAAGTGCGTGATTCCGCCCAAACCGTGCCAACCGAAGCGAT
TGTAGGCGAACAGGCAACCCGTGGGGCACGAATGGCCGAGCAACAAGTGCATTCGGTACGCTTGCCAGGCTATGTCATTA
GCATTGAGGCGATTTTCGGCATGCCCGATCAAAAGCTGATTTTGCGCCATGAAGCTGGCAATGGAGCCGAGCCATATGTT
GATGGAGCCTTGCTAGCGATTCGCAACGTTCATACCTTCGTCGGCTTGAAACGTGGTTTAGAGCATGTCTTGGATTTAGA
TTAA

Upstream 100 bases:

>100_bases
CCCAATCGGCAACGCAAAACCCCTGTTGTTCAATTGAGCAACGGGGGTTTTCATTTAACTTGGATGATAAATCTAGAGCT
TTTTAATTAGGAGATTGATT

Downstream 100 bases:

>100_bases
ACAACAAGAAACCCGCTGGAAAAATCCAGCGGGTTTCTATGGAGCGGTACGCATCCCCCTACGTTCCCACAGCGGGTGCT
GCAGTAGCCTCGGTGTGTGT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSIRVCLAGATGWAGSALAQGIAKTNDLRLVAAVSRSHAGQQVGVVLNQPELDCPIFATAEEALSQPCDVFVEYTKPAVA
LDNVLKALASGAHVVIGTSGLDDPAYATINEAALKAQRGVLAVGNFALTVVLLQKFATIAARYIPHSEIIDYASDKKIDA
PSGTARELAYRLGQVRDSAQTVPTEAIVGEQATRGARMAEQQVHSVRLPGYVISIEAIFGMPDQKLILRHEAGNGAEPYV
DGALLAIRNVHTFVGLKRGLEHVLDLD

Sequences:

>Translated_267_residues
MSIRVCLAGATGWAGSALAQGIAKTNDLRLVAAVSRSHAGQQVGVVLNQPELDCPIFATAEEALSQPCDVFVEYTKPAVA
LDNVLKALASGAHVVIGTSGLDDPAYATINEAALKAQRGVLAVGNFALTVVLLQKFATIAARYIPHSEIIDYASDKKIDA
PSGTARELAYRLGQVRDSAQTVPTEAIVGEQATRGARMAEQQVHSVRLPGYVISIEAIFGMPDQKLILRHEAGNGAEPYV
DGALLAIRNVHTFVGLKRGLEHVLDLD
>Mature_266_residues
SIRVCLAGATGWAGSALAQGIAKTNDLRLVAAVSRSHAGQQVGVVLNQPELDCPIFATAEEALSQPCDVFVEYTKPAVAL
DNVLKALASGAHVVIGTSGLDDPAYATINEAALKAQRGVLAVGNFALTVVLLQKFATIAARYIPHSEIIDYASDKKIDAP
SGTARELAYRLGQVRDSAQTVPTEAIVGEQATRGARMAEQQVHSVRLPGYVISIEAIFGMPDQKLILRHEAGNGAEPYVD
GALLAIRNVHTFVGLKRGLEHVLDLD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 28244; Mature: 28112

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRVCLAGATGWAGSALAQGIAKTNDLRLVAAVSRSHAGQQVGVVLNQPELDCPIFATA
CCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEHHHHCCCCEEEEEECCCCCCCCEEECH
EEALSQPCDVFVEYTKPAVALDNVLKALASGAHVVIGTSGLDDPAYATINEAALKAQRGV
HHHHCCCHHEEHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCE
LAVGNFALTVVLLQKFATIAARYIPHSEIIDYASDKKIDAPSGTARELAYRLGQVRDSAQ
EEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TVPTEAIVGEQATRGARMAEQQVHSVRLPGYVISIEAIFGMPDQKLILRHEAGNGAEPYV
HCCHHHHHCCHHHHHHHHHHHHHHHEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCH
DGALLAIRNVHTFVGLKRGLEHVLDLD
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIRVCLAGATGWAGSALAQGIAKTNDLRLVAAVSRSHAGQQVGVVLNQPELDCPIFATA
CEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEHHHHCCCCEEEEEECCCCCCCCEEECH
EEALSQPCDVFVEYTKPAVALDNVLKALASGAHVVIGTSGLDDPAYATINEAALKAQRGV
HHHHCCCHHEEHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCE
LAVGNFALTVVLLQKFATIAARYIPHSEIIDYASDKKIDAPSGTARELAYRLGQVRDSAQ
EEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TVPTEAIVGEQATRGARMAEQQVHSVRLPGYVISIEAIFGMPDQKLILRHEAGNGAEPYV
HCCHHHHHCCHHHHHHHHHHHHHHHEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCH
DGALLAIRNVHTFVGLKRGLEHVLDLD
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]