Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159899735

Identifier: 159899735

GI number: 159899735

Start: 4067039

End: 4069714

Strand: Reverse

Name: 159899735

Synonym: Haur_3217

Alternate gene names: NA

Gene position: 4069714-4067039 (Counterclockwise)

Preceding gene: 159899736

Following gene: 159899734

Centisome position: 64.12

GC content: 47.65

Gene sequence:

>2676_bases
ATGCAGCCACATCGTGAGCGGGCTACACCCAAAACTGAACGCAATTGGTGGCGGTTTTTGCCTGTGTTGGGCGCAATTGG
CTTAATTGGCTTGATGCTGGTATTGACCTTTATGCCAAGCAGCCTTGACGAAACCAGCCCAAACCCCAGCGAGGTCGCAT
TGCTTGGCTCAGCCACGCCAAGCATGCAACCAAGCGCGACGATCATTGCCGCGCCATTTCCAACCACGATTCTTGAGCAA
CCCCCAATTCAAGTTGTGCCAACCTTGCCAACTGAGGTTACTCAGCTTCCTTCCCAACCAACTGGCACGATTACGCTTGT
GCCAACCCAAGAACCAAGCGATCTGGCCGTGTTGCCAACGATTGTGCCGATAATTGAACAGCCAGCGGTTGCTTTGCCGA
TTACAACCCTTGCTGCCCAAACACCTACTCCAGTGCCCACTTCAACCGCTCGGCCTGCTGCTGCTGCTGAAACCGAACTC
TATGCCATTATCAACAATGCCAACCTGGAGCAATATCAATTGGTGCGGCTTGCGCCAACTGGCTTGGTAACGATTGCGAC
TGTTGATCAAAATGCCGAAGATCTAAGCATCATTTTGCCTGAACAACAAACCTTGTTCTTGGCCCGCAACCAAACCCTAT
TTGCGATTGACCTGACGACTGGATTGCCACGTTGGAGCTACCCATTACAGCCGAAAAGTAACTATGATTATCAAAGTAGC
TTAACAGTCGATCAAGCCGGAACAGGGGTTTATCTGCTTGATCGTAGTAGTTTAGATCAGAGCTGGCGTTTGAGTCATCT
CAACCTTGCAGATGGGCGGTTGCTTAATCCGCCTCAACAGCTATCCCCAAGGTTGCATAGCATTTCATTGGTCGGTGATG
GCAAGCTGTGGTTTGTTGATAATGATAAACTGTATCGACTAGATCCTGAAACCCAAACCCAACGCGATTTTGGAGCAGTC
AGCGATACCCAGATTCTTGGTGATGGGCGGCAAGCAGCACTGGGAGTTTTTCGTGAGCCAACCAAGTTTAGCTTGATCGA
TTGGGCCAACAGCACTGAGCACGATGTTACACTTGCTACGCCTTTTCAGGGCACTATGCTGAGTGCCAGCCTCTCCAATG
ATCGAACCATTCTGATAGTCAATAGTTTTGTTGCAAATCCTAATCCTAAGATTAGGACAAAATATTTTCACTCGGCCTAT
AACCTTGATAATGGAGCCTTGGTTGCGATTCGTGAAGTTGACTTATTGACTTCGGTCTACCCAACCACCATTGGCGATCA
ATGGCTGATAAAAACGAATGATTTTGATCGCTCACAACTGACCTTGCACACATGGAATGTGGCCACAAATAGCCTAACTA
AGCGGATCGAACCCAGCGTGCTGGGCGAACATGGCGTTGCCTGGATTGGCGAAGTAGCTGGGGCAACACTTACCCCGCTT
AATCAGGAATTACAAGCAGCAGTTGCGCCATTACCAACCCAAGTGCCGATCTTTGAGCAACCTGCCTTGCCCACAATTCA
GCCTCCAACCAAACAGCCAATTGCCATCTTTGGTGATATTCGAGCGCTAAGCTTGAACCTACGCCAATTCAATAGCGATC
AATCGCTGGATTTGCTCTCTGAACAAGGCATGGGTATATTTCCACGCTATAACCAATCTCCATTATTATTGCAACGCCCA
CAATCAAAAACATGGCAATTGACCGACCTTGTAACCCAACAAAGTGCCCAATGGGAATTTGAGAAGTTGATCAATGCTGA
GAATTTTAATTCCTTGCTAGCGCCAAATACTCAACGTCTATTGGCGGTTGTGGGCCAAGATTTACGCAGCACCGACCAAT
TTACTGGGGCGAGCCAGCTTATTCAAATGAATGTACAAACTGGCCAATGGGATATTATTACTGATTCGCGTGCTTGGTCG
GATCTAAAGTGGTCGTATCCGATTGCATGGCAAGGCGATACGGTCTATTTTCTCCAAACCAGCAAAAATCCGCAGATTCT
TTGGCGCGCACAGCTCGGGCCACCGTTTCAAGCTGAGAAGATCGCCGAAATTCCAAGTATTCTGGCCAATATTCCCGATG
TTGATTCGGCGATTCTCACTCAGGTCTATATTTCACCCAACCAACGGTGGTTGCTCTATCCTTTAGCAACTGGCAATAAA
ACCATGGTGATTCGGGTGCTCGATTTAAGTAATCAGCGCAGCCATGATATTGCCTTGCCCTTAATGAGCTTGTATGGGCT
TAGCTTTTCGCCTGAGGGCAATAGTTTTGCCTTGATGCTGCCACATCCTGATCGCGGGCACTATCCGGCTTTATATCAAT
TTGAGCCACAGCGCTGGTATCAACTTGATGCTAACAGCTATAGCGAGAGTGGCGAAAGCCCATTTTTATGGTCGCCCGAT
GGCCATTGGTTGGCATTGGATTTGAGCAATATTGGCGGAGAATCGCAGTTAAGGGTCTATAATGCCCAACAACCAAGTTT
GGCCTTTACTGCAAATTTTGACTCAATCAACGAGCCATTGGCATTATATAACGACGGAAAAACGATCTTGGCTCGCCATT
TTTGGCAAACAAGCCTTGAGCAATTAACTTGGAATGGACAACAATGGCAAATTAATTGGCGGGTTAACGATGAGATTATA
CATTCGGATACCTTGTATTATGTGTATCCGCGCTAA

Upstream 100 bases:

>100_bases
GTTCCGTTCTTCGTTGGTTCCATTCTTTATGAATCAAGTACCACTCTTTGATCCCTAGCGCTTTCGTGGAGCAAATAATT
AATCGTAGGAGAAGTAGAGT

Downstream 100 bases:

>100_bases
TTGATTTAACACCTCACCCTCCTTTTCAAGGATTAGTTGGGTGGCAGTTGCCACCGATGGCCATGCCCTCAGCCTCTGAC
CTCCGCTCCCGCCCAGCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 891; Mature: 891

Protein sequence:

>891_residues
MQPHRERATPKTERNWWRFLPVLGAIGLIGLMLVLTFMPSSLDETSPNPSEVALLGSATPSMQPSATIIAAPFPTTILEQ
PPIQVVPTLPTEVTQLPSQPTGTITLVPTQEPSDLAVLPTIVPIIEQPAVALPITTLAAQTPTPVPTSTARPAAAAETEL
YAIINNANLEQYQLVRLAPTGLVTIATVDQNAEDLSIILPEQQTLFLARNQTLFAIDLTTGLPRWSYPLQPKSNYDYQSS
LTVDQAGTGVYLLDRSSLDQSWRLSHLNLADGRLLNPPQQLSPRLHSISLVGDGKLWFVDNDKLYRLDPETQTQRDFGAV
SDTQILGDGRQAALGVFREPTKFSLIDWANSTEHDVTLATPFQGTMLSASLSNDRTILIVNSFVANPNPKIRTKYFHSAY
NLDNGALVAIREVDLLTSVYPTTIGDQWLIKTNDFDRSQLTLHTWNVATNSLTKRIEPSVLGEHGVAWIGEVAGATLTPL
NQELQAAVAPLPTQVPIFEQPALPTIQPPTKQPIAIFGDIRALSLNLRQFNSDQSLDLLSEQGMGIFPRYNQSPLLLQRP
QSKTWQLTDLVTQQSAQWEFEKLINAENFNSLLAPNTQRLLAVVGQDLRSTDQFTGASQLIQMNVQTGQWDIITDSRAWS
DLKWSYPIAWQGDTVYFLQTSKNPQILWRAQLGPPFQAEKIAEIPSILANIPDVDSAILTQVYISPNQRWLLYPLATGNK
TMVIRVLDLSNQRSHDIALPLMSLYGLSFSPEGNSFALMLPHPDRGHYPALYQFEPQRWYQLDANSYSESGESPFLWSPD
GHWLALDLSNIGGESQLRVYNAQQPSLAFTANFDSINEPLALYNDGKTILARHFWQTSLEQLTWNGQQWQINWRVNDEII
HSDTLYYVYPR

Sequences:

>Translated_891_residues
MQPHRERATPKTERNWWRFLPVLGAIGLIGLMLVLTFMPSSLDETSPNPSEVALLGSATPSMQPSATIIAAPFPTTILEQ
PPIQVVPTLPTEVTQLPSQPTGTITLVPTQEPSDLAVLPTIVPIIEQPAVALPITTLAAQTPTPVPTSTARPAAAAETEL
YAIINNANLEQYQLVRLAPTGLVTIATVDQNAEDLSIILPEQQTLFLARNQTLFAIDLTTGLPRWSYPLQPKSNYDYQSS
LTVDQAGTGVYLLDRSSLDQSWRLSHLNLADGRLLNPPQQLSPRLHSISLVGDGKLWFVDNDKLYRLDPETQTQRDFGAV
SDTQILGDGRQAALGVFREPTKFSLIDWANSTEHDVTLATPFQGTMLSASLSNDRTILIVNSFVANPNPKIRTKYFHSAY
NLDNGALVAIREVDLLTSVYPTTIGDQWLIKTNDFDRSQLTLHTWNVATNSLTKRIEPSVLGEHGVAWIGEVAGATLTPL
NQELQAAVAPLPTQVPIFEQPALPTIQPPTKQPIAIFGDIRALSLNLRQFNSDQSLDLLSEQGMGIFPRYNQSPLLLQRP
QSKTWQLTDLVTQQSAQWEFEKLINAENFNSLLAPNTQRLLAVVGQDLRSTDQFTGASQLIQMNVQTGQWDIITDSRAWS
DLKWSYPIAWQGDTVYFLQTSKNPQILWRAQLGPPFQAEKIAEIPSILANIPDVDSAILTQVYISPNQRWLLYPLATGNK
TMVIRVLDLSNQRSHDIALPLMSLYGLSFSPEGNSFALMLPHPDRGHYPALYQFEPQRWYQLDANSYSESGESPFLWSPD
GHWLALDLSNIGGESQLRVYNAQQPSLAFTANFDSINEPLALYNDGKTILARHFWQTSLEQLTWNGQQWQINWRVNDEII
HSDTLYYVYPR
>Mature_891_residues
MQPHRERATPKTERNWWRFLPVLGAIGLIGLMLVLTFMPSSLDETSPNPSEVALLGSATPSMQPSATIIAAPFPTTILEQ
PPIQVVPTLPTEVTQLPSQPTGTITLVPTQEPSDLAVLPTIVPIIEQPAVALPITTLAAQTPTPVPTSTARPAAAAETEL
YAIINNANLEQYQLVRLAPTGLVTIATVDQNAEDLSIILPEQQTLFLARNQTLFAIDLTTGLPRWSYPLQPKSNYDYQSS
LTVDQAGTGVYLLDRSSLDQSWRLSHLNLADGRLLNPPQQLSPRLHSISLVGDGKLWFVDNDKLYRLDPETQTQRDFGAV
SDTQILGDGRQAALGVFREPTKFSLIDWANSTEHDVTLATPFQGTMLSASLSNDRTILIVNSFVANPNPKIRTKYFHSAY
NLDNGALVAIREVDLLTSVYPTTIGDQWLIKTNDFDRSQLTLHTWNVATNSLTKRIEPSVLGEHGVAWIGEVAGATLTPL
NQELQAAVAPLPTQVPIFEQPALPTIQPPTKQPIAIFGDIRALSLNLRQFNSDQSLDLLSEQGMGIFPRYNQSPLLLQRP
QSKTWQLTDLVTQQSAQWEFEKLINAENFNSLLAPNTQRLLAVVGQDLRSTDQFTGASQLIQMNVQTGQWDIITDSRAWS
DLKWSYPIAWQGDTVYFLQTSKNPQILWRAQLGPPFQAEKIAEIPSILANIPDVDSAILTQVYISPNQRWLLYPLATGNK
TMVIRVLDLSNQRSHDIALPLMSLYGLSFSPEGNSFALMLPHPDRGHYPALYQFEPQRWYQLDANSYSESGESPFLWSPD
GHWLALDLSNIGGESQLRVYNAQQPSLAFTANFDSINEPLALYNDGKTILARHFWQTSLEQLTWNGQQWQINWRVNDEII
HSDTLYYVYPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 99326; Mature: 99326

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPHRERATPKTERNWWRFLPVLGAIGLIGLMLVLTFMPSSLDETSPNPSEVALLGSATP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
SMQPSATIIAAPFPTTILEQPPIQVVPTLPTEVTQLPSQPTGTITLVPTQEPSDLAVLPT
CCCCCCEEEECCCCHHHHCCCCCEEEECCCHHHHHCCCCCCCEEEEEECCCCCCEEEHHH
IVPIIEQPAVALPITTLAAQTPTPVPTSTARPAAAAETELYAIINNANLEQYQLVRLAPT
HHHHHCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCC
GLVTIATVDQNAEDLSIILPEQQTLFLARNQTLFAIDLTTGLPRWSYPLQPKSNYDYQSS
CEEEEEEECCCCCCEEEEECCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCE
LTVDQAGTGVYLLDRSSLDQSWRLSHLNLADGRLLNPPQQLSPRLHSISLVGDGKLWFVD
EEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCHHHHCCCEEEEEEEECCEEEEEE
NDKLYRLDPETQTQRDFGAVSDTQILGDGRQAALGVFREPTKFSLIDWANSTEHDVTLAT
CCEEEEECCCCCCHHHCCCCCCCEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCEEEEC
PFQGTMLSASLSNDRTILIVNSFVANPNPKIRTKYFHSAYNLDNGALVAIREVDLLTSVY
CCCCEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEHEECCCCCCEEEEEEEHHHHHHC
PTTIGDQWLIKTNDFDRSQLTLHTWNVATNSLTKRIEPSVLGEHGVAWIGEVAGATLTPL
CCCCCCEEEEEECCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHCCCEECCC
NQELQAAVAPLPTQVPIFEQPALPTIQPPTKQPIAIFGDIRALSLNLRQFNSDQSLDLLS
CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEEEEECCCCCCCHHHHH
EQGMGIFPRYNQSPLLLQRPQSKTWQLTDLVTQQSAQWEFEKLINAENFNSLLAPNTQRL
HCCCEECCCCCCCCEEEECCCCCCEEHHHHHHCCCCCCHHHHHCCCCCCCHHCCCCHHHH
LAVVGQDLRSTDQFTGASQLIQMNVQTGQWDIITDSRAWSDLKWSYPIAWQGDTVYFLQT
HHHHHHHHHCCHHCCCCCEEEEEEECCCEEEEEECCCCCCCCEECCCEEECCCEEEEEEE
SKNPQILWRAQLGPPFQAEKIAEIPSILANIPDVDSAILTQVYISPNQRWLLYPLATGNK
CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEEECCCC
TMVIRVLDLSNQRSHDIALPLMSLYGLSFSPEGNSFALMLPHPDRGHYPALYQFEPQRWY
EEEEEEEECCCCCCCCEEHHHHHHHCCEECCCCCEEEEEECCCCCCCCCEEEEECCCCEE
QLDANSYSESGESPFLWSPDGHWLALDLSNIGGESQLRVYNAQQPSLAFTANFDSINEPL
EECCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCE
ALYNDGKTILARHFWQTSLEQLTWNGQQWQINWRVNDEIIHSDTLYYVYPR
EEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCEEEEEECC
>Mature Secondary Structure
MQPHRERATPKTERNWWRFLPVLGAIGLIGLMLVLTFMPSSLDETSPNPSEVALLGSATP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
SMQPSATIIAAPFPTTILEQPPIQVVPTLPTEVTQLPSQPTGTITLVPTQEPSDLAVLPT
CCCCCCEEEECCCCHHHHCCCCCEEEECCCHHHHHCCCCCCCEEEEEECCCCCCEEEHHH
IVPIIEQPAVALPITTLAAQTPTPVPTSTARPAAAAETELYAIINNANLEQYQLVRLAPT
HHHHHCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCC
GLVTIATVDQNAEDLSIILPEQQTLFLARNQTLFAIDLTTGLPRWSYPLQPKSNYDYQSS
CEEEEEEECCCCCCEEEEECCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCE
LTVDQAGTGVYLLDRSSLDQSWRLSHLNLADGRLLNPPQQLSPRLHSISLVGDGKLWFVD
EEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCHHHHCCCEEEEEEEECCEEEEEE
NDKLYRLDPETQTQRDFGAVSDTQILGDGRQAALGVFREPTKFSLIDWANSTEHDVTLAT
CCEEEEECCCCCCHHHCCCCCCCEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCEEEEC
PFQGTMLSASLSNDRTILIVNSFVANPNPKIRTKYFHSAYNLDNGALVAIREVDLLTSVY
CCCCEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEHEECCCCCCEEEEEEEHHHHHHC
PTTIGDQWLIKTNDFDRSQLTLHTWNVATNSLTKRIEPSVLGEHGVAWIGEVAGATLTPL
CCCCCCEEEEEECCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHCCCEECCC
NQELQAAVAPLPTQVPIFEQPALPTIQPPTKQPIAIFGDIRALSLNLRQFNSDQSLDLLS
CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEEEEECCCCCCCHHHHH
EQGMGIFPRYNQSPLLLQRPQSKTWQLTDLVTQQSAQWEFEKLINAENFNSLLAPNTQRL
HCCCEECCCCCCCCEEEECCCCCCEEHHHHHHCCCCCCHHHHHCCCCCCCHHCCCCHHHH
LAVVGQDLRSTDQFTGASQLIQMNVQTGQWDIITDSRAWSDLKWSYPIAWQGDTVYFLQT
HHHHHHHHHCCHHCCCCCEEEEEEECCCEEEEEECCCCCCCCEECCCEEECCCEEEEEEE
SKNPQILWRAQLGPPFQAEKIAEIPSILANIPDVDSAILTQVYISPNQRWLLYPLATGNK
CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEEECCCC
TMVIRVLDLSNQRSHDIALPLMSLYGLSFSPEGNSFALMLPHPDRGHYPALYQFEPQRWY
EEEEEEEECCCCCCCCEEHHHHHHHCCEECCCCCEEEEEECCCCCCCCCEEEEECCCCEE
QLDANSYSESGESPFLWSPDGHWLALDLSNIGGESQLRVYNAQQPSLAFTANFDSINEPL
EECCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCE
ALYNDGKTILARHFWQTSLEQLTWNGQQWQINWRVNDEIIHSDTLYYVYPR
EEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA