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The map label for this gene is secD [H]

Identifier: 159899623

GI number: 159899623

Start: 3915941

End: 3917557

Strand: Reverse

Name: secD [H]

Synonym: Haur_3104

Alternate gene names: 159899623

Gene position: 3917557-3915941 (Counterclockwise)

Preceding gene: 159899624

Following gene: 159899622

Centisome position: 61.73

GC content: 50.65

Gene sequence:

>1617_bases
ATGCGCTGTTGCGATGGGAGTTTCTTTAGGTATCTCTGGGTGGGCTGTATTCCTCGCCACGCCCATCCTTCACCAAACAC
GGAGGCAGCGTTCGTCGTGCGTAAGCAAGTAATTAGTGCCCTCGTCGTGACGATTGTGGCAGTTGCTTTAGCGACTTGGA
TTGTATTCTTTCCTAAGTCGTTCCAAAGCCTGACTGGTCGCGATGTTTCAACCCACTTAGGTCTCGACCTACAAGGCGGC
TCGCAAATCTTTTTACGTCCCGCCGATCCCAACGAAGCCGATTTGGCCGCCAAACTCGAAAATGCCGCTGGTGTGATCGA
GCGTCGTGTCAATGGCTTGGGCGTAAGCGAATCGGTTGTCCAAGTTGTCAACAGCGATAGTATTGTGGTCGAATTGCCAG
GGGTCAAAGATCCTGCGGCAGCTTCGGAAGCGCTCAAAGGCGCTGGTAACCTCGAATTTATTGATCCTCAAGGTCAGTAT
TTGCCCGATGGCACCGAAGTTTGTACCACCGCTACGCCACGTTACCCAATCACGGTGCAGTTGCCAAGCAGCGTCACTGG
CACAACTGGCGTAACCACCACCGACAGCTTGAGTAACACCAACCCGTTGTCGTCAACCAATAATTTGACCACAACCACTC
CAACCACTACTACTGAGCGGCCTTGTGAATCGCCATATACCACAATTGCTCGTGGTAGCGATCTCGACACCAGCCAAGTT
GCCTTGACAACTGATCAAGCTGGCCGTCCAGCAGTGTTCTTCCGCTTCCAAACCAACTCAGATTCGGCCACCCAAATCGC
TAGCTTTACCAGCCAAAACATTGGCCGGCCTATGTCGATTGTGGTTGATAACCGCGTGATTTCAAGCCCTCAAATTAATG
GCTCTTTGCCTGGCGAAGGGATCATTACGATGGGTTCGACTGGCACGACGGTTGCTGAGCAAAATTCACAAGCGCAAGCA
CTGCAAAACCAGCTCAAATATGGCGCTTTGCCAGTAACCTTGATCGAAGATAGTAACCGCAGCATCAGCGCAACCCTTGG
CAACGACTCAATTGACGCAAGCAAAATTGCTGGCGCAATTGGCTTGATTGCGGTTATGCTGTTTATGTTGATGTACTATC
GCTTGCCTGGCTTGTTAGCCGACATTGCCTTAATCGTTTATACCATCCTCTCATTTGCGATTTACAACTTGGTTCCGGTC
ACATTGACCTTGCCAGGGATCGCAGGCTTTATTTTGTCGATTGGTTTGGCCGTTGACGCGAACGTGTTGATTTTCGCGCG
GATCAAAGAAGAATTGCACCGTGGCCGCTCATTGGAACGGGCAGTCGAAGATGGCTTCAACCATGCATGGCCATCAATCC
GCGACTCCAACGCTTCAACCTTGATTACAAGCTTTATCTTGTATGTCTTGGGTAATGGGCTTGGCGTAAGTATCATCCAA
GGCTTTGCATTGACTTTGGCCTTGGGGATTATCGTCAGCTTGTTTACCGCAATCACCGTTTCGCGCATGTTGTTGCGCTT
GACGATTGATCTTGGGGTTTCGAATCCACGTTGGTTTGGGGTTAACCCCGAAGAAGATGCTGCTGAAGTGGCAGCCTTAT
CGTCAGAGCAAGCTTAA

Upstream 100 bases:

>100_bases
TTCCAGCTAGCCCCGCCTGTGCCTAAACCACACAGGCGGGGTCTATTTAACTCGTCATAATGTGGAAGGGCGTTTGACGC
GAGTGGGTATCGCGCCTATA

Downstream 100 bases:

>100_bases
TTTAGTTGATTTTCAACTATACCATCGATAAAGGATTGGGCTATGTTAGATTTAGTGCGTCGGCGCTATTTATGGTTTGC
AATTTCAATCCTGACAATTA

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MRCCDGSFFRYLWVGCIPRHAHPSPNTEAAFVVRKQVISALVVTIVAVALATWIVFFPKSFQSLTGRDVSTHLGLDLQGG
SQIFLRPADPNEADLAAKLENAAGVIERRVNGLGVSESVVQVVNSDSIVVELPGVKDPAAASEALKGAGNLEFIDPQGQY
LPDGTEVCTTATPRYPITVQLPSSVTGTTGVTTTDSLSNTNPLSSTNNLTTTTPTTTTERPCESPYTTIARGSDLDTSQV
ALTTDQAGRPAVFFRFQTNSDSATQIASFTSQNIGRPMSIVVDNRVISSPQINGSLPGEGIITMGSTGTTVAEQNSQAQA
LQNQLKYGALPVTLIEDSNRSISATLGNDSIDASKIAGAIGLIAVMLFMLMYYRLPGLLADIALIVYTILSFAIYNLVPV
TLTLPGIAGFILSIGLAVDANVLIFARIKEELHRGRSLERAVEDGFNHAWPSIRDSNASTLITSFILYVLGNGLGVSIIQ
GFALTLALGIIVSLFTAITVSRMLLRLTIDLGVSNPRWFGVNPEEDAAEVAALSSEQA

Sequences:

>Translated_538_residues
MRCCDGSFFRYLWVGCIPRHAHPSPNTEAAFVVRKQVISALVVTIVAVALATWIVFFPKSFQSLTGRDVSTHLGLDLQGG
SQIFLRPADPNEADLAAKLENAAGVIERRVNGLGVSESVVQVVNSDSIVVELPGVKDPAAASEALKGAGNLEFIDPQGQY
LPDGTEVCTTATPRYPITVQLPSSVTGTTGVTTTDSLSNTNPLSSTNNLTTTTPTTTTERPCESPYTTIARGSDLDTSQV
ALTTDQAGRPAVFFRFQTNSDSATQIASFTSQNIGRPMSIVVDNRVISSPQINGSLPGEGIITMGSTGTTVAEQNSQAQA
LQNQLKYGALPVTLIEDSNRSISATLGNDSIDASKIAGAIGLIAVMLFMLMYYRLPGLLADIALIVYTILSFAIYNLVPV
TLTLPGIAGFILSIGLAVDANVLIFARIKEELHRGRSLERAVEDGFNHAWPSIRDSNASTLITSFILYVLGNGLGVSIIQ
GFALTLALGIIVSLFTAITVSRMLLRLTIDLGVSNPRWFGVNPEEDAAEVAALSSEQA
>Mature_538_residues
MRCCDGSFFRYLWVGCIPRHAHPSPNTEAAFVVRKQVISALVVTIVAVALATWIVFFPKSFQSLTGRDVSTHLGLDLQGG
SQIFLRPADPNEADLAAKLENAAGVIERRVNGLGVSESVVQVVNSDSIVVELPGVKDPAAASEALKGAGNLEFIDPQGQY
LPDGTEVCTTATPRYPITVQLPSSVTGTTGVTTTDSLSNTNPLSSTNNLTTTTPTTTTERPCESPYTTIARGSDLDTSQV
ALTTDQAGRPAVFFRFQTNSDSATQIASFTSQNIGRPMSIVVDNRVISSPQINGSLPGEGIITMGSTGTTVAEQNSQAQA
LQNQLKYGALPVTLIEDSNRSISATLGNDSIDASKIAGAIGLIAVMLFMLMYYRLPGLLADIALIVYTILSFAIYNLVPV
TLTLPGIAGFILSIGLAVDANVLIFARIKEELHRGRSLERAVEDGFNHAWPSIRDSNASTLITSFILYVLGNGLGVSIIQ
GFALTLALGIIVSLFTAITVSRMLLRLTIDLGVSNPRWFGVNPEEDAAEVAALSSEQA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=447, Percent_Identity=31.9910514541387, Blast_Score=179, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57095; Mature: 57095

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCCDGSFFRYLWVGCIPRHAHPSPNTEAAFVVRKQVISALVVTIVAVALATWIVFFPKS
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQSLTGRDVSTHLGLDLQGGSQIFLRPADPNEADLAAKLENAAGVIERRVNGLGVSESVV
HHHHCCCCCHHHCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QVVNSDSIVVELPGVKDPAAASEALKGAGNLEFIDPQGQYLPDGTEVCTTATPRYPITVQ
HHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEEECCCCCCEEEEE
LPSSVTGTTGVTTTDSLSNTNPLSSTNNLTTTTPTTTTERPCESPYTTIARGSDLDTSQV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCEE
ALTTDQAGRPAVFFRFQTNSDSATQIASFTSQNIGRPMSIVVDNRVISSPQINGSLPGEG
EEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECEEECCCCCCCCCCCCC
IITMGSTGTTVAEQNSQAQALQNQLKYGALPVTLIEDSNRSISATLGNDSIDASKIAGAI
EEEECCCCCEECCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHH
GLIAVMLFMLMYYRLPGLLADIALIVYTILSFAIYNLVPVTLTLPGIAGFILSIGLAVDA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHCCC
NVLIFARIKEELHRGRSLERAVEDGFNHAWPSIRDSNASTLITSFILYVLGNGLGVSIIQ
CEEEEHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
GFALTLALGIIVSLFTAITVSRMLLRLTIDLGVSNPRWFGVNPEEDAAEVAALSSEQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MRCCDGSFFRYLWVGCIPRHAHPSPNTEAAFVVRKQVISALVVTIVAVALATWIVFFPKS
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQSLTGRDVSTHLGLDLQGGSQIFLRPADPNEADLAAKLENAAGVIERRVNGLGVSESVV
HHHHCCCCCHHHCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QVVNSDSIVVELPGVKDPAAASEALKGAGNLEFIDPQGQYLPDGTEVCTTATPRYPITVQ
HHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEEECCCCCCEEEEE
LPSSVTGTTGVTTTDSLSNTNPLSSTNNLTTTTPTTTTERPCESPYTTIARGSDLDTSQV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCEE
ALTTDQAGRPAVFFRFQTNSDSATQIASFTSQNIGRPMSIVVDNRVISSPQINGSLPGEG
EEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECEEECCCCCCCCCCCCC
IITMGSTGTTVAEQNSQAQALQNQLKYGALPVTLIEDSNRSISATLGNDSIDASKIAGAI
EEEECCCCCEECCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHH
GLIAVMLFMLMYYRLPGLLADIALIVYTILSFAIYNLVPVTLTLPGIAGFILSIGLAVDA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHCCC
NVLIFARIKEELHRGRSLERAVEDGFNHAWPSIRDSNASTLITSFILYVLGNGLGVSIIQ
CEEEEHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
GFALTLALGIIVSLFTAITVSRMLLRLTIDLGVSNPRWFGVNPEEDAAEVAALSSEQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]