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The map label for this gene is rpoE [H]

Identifier: 159899566

GI number: 159899566

Start: 3848637

End: 3849203

Strand: Reverse

Name: rpoE [H]

Synonym: Haur_3047

Alternate gene names: 159899566

Gene position: 3849203-3848637 (Counterclockwise)

Preceding gene: 159899568

Following gene: 159899565

Centisome position: 60.65

GC content: 50.44

Gene sequence:

>567_bases
ATGCTTGCTTTTCAACCTAGCAACCAAGAATTAAATGAAGCTAGTCTGGTTGCTGGGTTGCGCCAGCGCGACGATGCAGC
CTTTAATTATTTTTTGCAAACCTTCGCACCACAGCTGCAACGCTTAGCTCGGCGCTATGTTTACTCCGATGATGAAGCTG
ATGATATTGTGCAAGAGAGTTTTATTCGCGCGGCTGAGCACATCAATCGTTTTGAAGGCCGTAGTAGCCTTGGCACATGG
CTGCATCGTATTACGATCAACGCTGCGCTCGATTATCGCCGTCGCCAACGACCCCAAACCAACTTGAATGAACTCGATGA
GCGAATGAGTGTTAGCGATTTGGGCGATGCCACGCTTTCGGCTGAATTAAGCCAATATATTTATGCAGCACTGGAAACGC
TGCCAACCCGCCAACGCATGGCGATCAATTTGTGTTATTTGCAAGGAATGACTGCCCAAGAGGCCTCATGCTCTTTGGGG
ATTAGCCCCGACACCGTGTATGGCTATTTGCAACAAGCCTACCCCACCTTGCGTCGCGCCTTGGCCTGCTACATGGCCGA
AGCGTGA

Upstream 100 bases:

>100_bases
TGCTATTTGCTATGAGGCTTAGCAATAGCTTGTGCTAAAGTTGCAACACCGCTGAATTGGGCTTACAAATACTGATTATT
CCTAGCGAAGGATTGTTGTG

Downstream 100 bases:

>100_bases
AACACCTTTTTGGTTTGGGGCGTATAGCTGCTGCAACATCCATCTGGCGGCAGTTCCCGCAAGGAGGTGTCCTATGCAAA
TCACACTTATGGTGATGTTG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MLAFQPSNQELNEASLVAGLRQRDDAAFNYFLQTFAPQLQRLARRYVYSDDEADDIVQESFIRAAEHINRFEGRSSLGTW
LHRITINAALDYRRRQRPQTNLNELDERMSVSDLGDATLSAELSQYIYAALETLPTRQRMAINLCYLQGMTAQEASCSLG
ISPDTVYGYLQQAYPTLRRALACYMAEA

Sequences:

>Translated_188_residues
MLAFQPSNQELNEASLVAGLRQRDDAAFNYFLQTFAPQLQRLARRYVYSDDEADDIVQESFIRAAEHINRFEGRSSLGTW
LHRITINAALDYRRRQRPQTNLNELDERMSVSDLGDATLSAELSQYIYAALETLPTRQRMAINLCYLQGMTAQEASCSLG
ISPDTVYGYLQQAYPTLRRALACYMAEA
>Mature_188_residues
MLAFQPSNQELNEASLVAGLRQRDDAAFNYFLQTFAPQLQRLARRYVYSDDEADDIVQESFIRAAEHINRFEGRSSLGTW
LHRITINAALDYRRRQRPQTNLNELDERMSVSDLGDATLSAELSQYIYAALETLPTRQRMAINLCYLQGMTAQEASCSLG
ISPDTVYGYLQQAYPTLRRALACYMAEA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=168, Percent_Identity=30.952380952381, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21418; Mature: 21418

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAFQPSNQELNEASLVAGLRQRDDAAFNYFLQTFAPQLQRLARRYVYSDDEADDIVQES
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FIRAAEHINRFEGRSSLGTWLHRITINAALDYRRRQRPQTNLNELDERMSVSDLGDATLS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH
AELSQYIYAALETLPTRQRMAINLCYLQGMTAQEASCSLGISPDTVYGYLQQAYPTLRRA
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LACYMAEA
HHHHHHCC
>Mature Secondary Structure
MLAFQPSNQELNEASLVAGLRQRDDAAFNYFLQTFAPQLQRLARRYVYSDDEADDIVQES
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FIRAAEHINRFEGRSSLGTWLHRITINAALDYRRRQRPQTNLNELDERMSVSDLGDATLS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH
AELSQYIYAALETLPTRQRMAINLCYLQGMTAQEASCSLGISPDTVYGYLQQAYPTLRRA
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LACYMAEA
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]