| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159899421
Identifier: 159899421
GI number: 159899421
Start: 3671239
End: 3672048
Strand: Reverse
Name: 159899421
Synonym: Haur_2902
Alternate gene names: NA
Gene position: 3672048-3671239 (Counterclockwise)
Preceding gene: 159899422
Following gene: 159899420
Centisome position: 57.86
GC content: 51.48
Gene sequence:
>810_bases ATGAGCCGAGCCACGCCGTTTGCTAGCCGTATTTTAGTTGGGGTAACCAGTCTGATTGGGCTGGTTGCCTTTTTTTATCC ATTTTTTCTAAGCGAAGTTCAGGCTGGCGATAATCATGCTGCCGATGCGCCTTTGATTATGTTGTTACTCGGGCCATTAT TGCTCGGGATTATTCTGGCGGATCTCAATAGTCATGCGATGAATTCGCGGGTGGTGGCAGCCTTGGGCATGTTGGTGGCG ATCAATGCAGTGCTGCGCTTGCCTGCTGGCCCAGGTGATAGCCCAACCTTTTTCTTTTTGGTCATTTTGGCGGGCTTTGT CTATGGTGGGCGCTTTGGATTTTTACTAGGTAGCCTGAGTTTAGCAGTTTCGGCCTTGTTGGTGGCAGGGATTGGCCCAT GGATGCCGTTTCAGATGTTGGCAATGGGCTGGTTGGGATTAAGCACCGCCTTGTTGCAGCCTATCAAACGCTGGTTGAAA TTGGCCGATGCTGGGTGGGGCGAAGTCGTCCTGCTAGCGATATTTGGCTGGGTTTGGGGCTTACTCTTCGGCGGCTTGAT GAACCTGACATTTTGGCCATTTAGCGCAGGCGAAAGCGCAATTTCCTGGCAACCAGGCTTGGGGTTTGGCCCAACCGTAG AGCGCTATTGGGCCTTTTATCTGCTAACTTCATTGGGCTGGGATGCCACACGAGCCTTCTTCAATGTTTTGCTGATTATG GCCTTTGGCAAGCCAATTCTGGCAGTCTTGCGGCGCTTTCAGCTACGGCTCAATTGGCAAACTCAGGAGAGCATAGAGCA AAGAACATAG
Upstream 100 bases:
>100_bases GGGAAGTACCGCTACCAGCCGAATTAGAGAAAATTCTGACGACCTTGCGCACCCGCTATGAAACAATTGTCTATCCCGAC CCATTGATTGAAGCCGTTTC
Downstream 100 bases:
>100_bases AGCATAGGGATCAGGTTTTGATCCACGAAGGACACGAAGGGCACGAAGGTTGAAACCACGAAGCACGCGAAGATCGTGAA TGATGAGGCTATGGTCTATA
Product: hypothetical protein
Products: NA
Alternate protein names: Transport System Permease Protein; ABC-Type Transporter Permease Components
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MSRATPFASRILVGVTSLIGLVAFFYPFFLSEVQAGDNHAADAPLIMLLLGPLLLGIILADLNSHAMNSRVVAALGMLVA INAVLRLPAGPGDSPTFFFLVILAGFVYGGRFGFLLGSLSLAVSALLVAGIGPWMPFQMLAMGWLGLSTALLQPIKRWLK LADAGWGEVVLLAIFGWVWGLLFGGLMNLTFWPFSAGESAISWQPGLGFGPTVERYWAFYLLTSLGWDATRAFFNVLLIM AFGKPILAVLRRFQLRLNWQTQESIEQRT
Sequences:
>Translated_269_residues MSRATPFASRILVGVTSLIGLVAFFYPFFLSEVQAGDNHAADAPLIMLLLGPLLLGIILADLNSHAMNSRVVAALGMLVA INAVLRLPAGPGDSPTFFFLVILAGFVYGGRFGFLLGSLSLAVSALLVAGIGPWMPFQMLAMGWLGLSTALLQPIKRWLK LADAGWGEVVLLAIFGWVWGLLFGGLMNLTFWPFSAGESAISWQPGLGFGPTVERYWAFYLLTSLGWDATRAFFNVLLIM AFGKPILAVLRRFQLRLNWQTQESIEQRT >Mature_268_residues SRATPFASRILVGVTSLIGLVAFFYPFFLSEVQAGDNHAADAPLIMLLLGPLLLGIILADLNSHAMNSRVVAALGMLVAI NAVLRLPAGPGDSPTFFFLVILAGFVYGGRFGFLLGSLSLAVSALLVAGIGPWMPFQMLAMGWLGLSTALLQPIKRWLKL ADAGWGEVVLLAIFGWVWGLLFGGLMNLTFWPFSAGESAISWQPGLGFGPTVERYWAFYLLTSLGWDATRAFFNVLLIMA FGKPILAVLRRFQLRLNWQTQESIEQRT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29311; Mature: 29180
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRATPFASRILVGVTSLIGLVAFFYPFFLSEVQAGDNHAADAPLIMLLLGPLLLGIILA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH DLNSHAMNSRVVAALGMLVAINAVLRLPAGPGDSPTFFFLVILAGFVYGGRFGFLLGSLS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH LAVSALLVAGIGPWMPFQMLAMGWLGLSTALLQPIKRWLKLADAGWGEVVLLAIFGWVWG HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LLFGGLMNLTFWPFSAGESAISWQPGLGFGPTVERYWAFYLLTSLGWDATRAFFNVLLIM HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AFGKPILAVLRRFQLRLNWQTQESIEQRT HHCCHHHHHHHHHHHHCCCCHHHHHHCCC >Mature Secondary Structure SRATPFASRILVGVTSLIGLVAFFYPFFLSEVQAGDNHAADAPLIMLLLGPLLLGIILA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH DLNSHAMNSRVVAALGMLVAINAVLRLPAGPGDSPTFFFLVILAGFVYGGRFGFLLGSLS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH LAVSALLVAGIGPWMPFQMLAMGWLGLSTALLQPIKRWLKLADAGWGEVVLLAIFGWVWG HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LLFGGLMNLTFWPFSAGESAISWQPGLGFGPTVERYWAFYLLTSLGWDATRAFFNVLLIM HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AFGKPILAVLRRFQLRLNWQTQESIEQRT HHCCHHHHHHHHHHHHCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA