Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159899233

Identifier: 159899233

GI number: 159899233

Start: 3467631

End: 3468794

Strand: Reverse

Name: 159899233

Synonym: Haur_2714

Alternate gene names: NA

Gene position: 3468794-3467631 (Counterclockwise)

Preceding gene: 159899234

Following gene: 159899232

Centisome position: 54.66

GC content: 46.65

Gene sequence:

>1164_bases
ATGGATAACAGGCGGCTGGCTTTGTTAGTTAGTTTATGTGCAGTGTTATTTGCTTTTGCTGTCGCTAAAAACCCTGGATT
AACAAATGCCAAAGTAAGATTAACTGAAACCCCAACCCCAAGCGAAATTTCCATTGCAACAAGTAGTTCTATAGTACCAT
CACCAAATAGTACTTCTATCATGACACCGACTGTCATCTGTCCAACCTACTATCTGTTCGAGAGCGATGCCCAAGCGCAT
ATACCAAACTCAAGCCCAACGCGCACCCCCGTTCCAACCCCCAATATTGATCCTTGCTATGTGCATCCGACCTTATTTCT
CAATGGACCAAGCCAAGTTAATGTTGGCGAATTATTCACTTTATCGATTACCTATGAAAATATTGGTATGCAACACACGC
GAATCTGGTTTAACGATGCAAATTTGGCACGGTTTGACCCACCATTAGTCATGCCATGTCAATATGATCGCCACCCAACC
CGCTGTGAGCGTATTACGTTGCGAGCTACCAGCGTTGGTACCTTGGTTATCAATGCTGATGCACGAGGTGAATCGTTTCA
TTATGGTTGGTATTGGAGTTCAGCAGCGGCACGAACTCCACTGACGATTAATGTTATCGATCCAAATGGCACCCCAGTGC
CAACCCCAACGTGTGTGCCTGCCACATTAACGCCTACGTCCACGGCCCAGCCAACCTATACTCCAACCGTGGTTGGTCAA
CGCGTTCCTGATTTAACCGAAACGCCAACGCCAAGTTCTACTTCGACAATCACTCCTGTGCCTTGTCAACCAGCAGTGTC
GCATCAGTTGATTTTGAATGCGCCAAGCCAAGTTCAGGTTGGCGATATGTTTACCATGACCGTCGATTATCAGAATATGA
GTGCACCTCGCATGGAAATCATGCTTAGCTCAAGCGAATTGGCTCAGTTTGATCCGCCATTGACCATGCCATGTCGCTAT
TCGGAACATCCGACCCAGTGTTCGACGATTACGTTACGGGCGACGGCTCCAGGGATGTTAACAATTAATGGTCGAGCCAT
AGCCGATATGTTTGTTGGTGATGGCTGGACATTTGGTTATACGAGCGCCCGTAATCCCATTAATGTGCAAGTACACGATG
GTCTACCCTATAAACTCTTTATTCCGCTTGCCAAAAACCAATAA

Upstream 100 bases:

>100_bases
TAAATAAGTTTATTTTTGGGCTGTTAGTCCTATAGCAAGCATAGTTCTGATAGTCAATACTAAGAGTCTAGGATTATTAT
TCGGAATCAAGGAGACTTCT

Downstream 100 bases:

>100_bases
ACCTTCCAACTAAACAAGGCGCAACCGATCGTCGTTAGGGCGATCGGTTGGCATTTAAACAGCAATTCTCGGCTACAATG
ACGCTGGTTCTTTGGCTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MDNRRLALLVSLCAVLFAFAVAKNPGLTNAKVRLTETPTPSEISIATSSSIVPSPNSTSIMTPTVICPTYYLFESDAQAH
IPNSSPTRTPVPTPNIDPCYVHPTLFLNGPSQVNVGELFTLSITYENIGMQHTRIWFNDANLARFDPPLVMPCQYDRHPT
RCERITLRATSVGTLVINADARGESFHYGWYWSSAAARTPLTINVIDPNGTPVPTPTCVPATLTPTSTAQPTYTPTVVGQ
RVPDLTETPTPSSTSTITPVPCQPAVSHQLILNAPSQVQVGDMFTMTVDYQNMSAPRMEIMLSSSELAQFDPPLTMPCRY
SEHPTQCSTITLRATAPGMLTINGRAIADMFVGDGWTFGYTSARNPINVQVHDGLPYKLFIPLAKNQ

Sequences:

>Translated_387_residues
MDNRRLALLVSLCAVLFAFAVAKNPGLTNAKVRLTETPTPSEISIATSSSIVPSPNSTSIMTPTVICPTYYLFESDAQAH
IPNSSPTRTPVPTPNIDPCYVHPTLFLNGPSQVNVGELFTLSITYENIGMQHTRIWFNDANLARFDPPLVMPCQYDRHPT
RCERITLRATSVGTLVINADARGESFHYGWYWSSAAARTPLTINVIDPNGTPVPTPTCVPATLTPTSTAQPTYTPTVVGQ
RVPDLTETPTPSSTSTITPVPCQPAVSHQLILNAPSQVQVGDMFTMTVDYQNMSAPRMEIMLSSSELAQFDPPLTMPCRY
SEHPTQCSTITLRATAPGMLTINGRAIADMFVGDGWTFGYTSARNPINVQVHDGLPYKLFIPLAKNQ
>Mature_387_residues
MDNRRLALLVSLCAVLFAFAVAKNPGLTNAKVRLTETPTPSEISIATSSSIVPSPNSTSIMTPTVICPTYYLFESDAQAH
IPNSSPTRTPVPTPNIDPCYVHPTLFLNGPSQVNVGELFTLSITYENIGMQHTRIWFNDANLARFDPPLVMPCQYDRHPT
RCERITLRATSVGTLVINADARGESFHYGWYWSSAAARTPLTINVIDPNGTPVPTPTCVPATLTPTSTAQPTYTPTVVGQ
RVPDLTETPTPSSTSTITPVPCQPAVSHQLILNAPSQVQVGDMFTMTVDYQNMSAPRMEIMLSSSELAQFDPPLTMPCRY
SEHPTQCSTITLRATAPGMLTINGRAIADMFVGDGWTFGYTSARNPINVQVHDGLPYKLFIPLAKNQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42156; Mature: 42156

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNRRLALLVSLCAVLFAFAVAKNPGLTNAKVRLTETPTPSEISIATSSSIVPSPNSTSI
CCCCEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEE
MTPTVICPTYYLFESDAQAHIPNSSPTRTPVPTPNIDPCYVHPTLFLNGPSQVNVGELFT
ECCEEECCEEEEEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEE
LSITYENIGMQHTRIWFNDANLARFDPPLVMPCQYDRHPTRCERITLRATSVGTLVINAD
EEEEECCCCCEEEEEEEECCCCEECCCCEEECCCCCCCCCCEEEEEEEEEEEEEEEEECC
ARGESFHYGWYWSSAAARTPLTINVIDPNGTPVPTPTCVPATLTPTSTAQPTYTPTVVGQ
CCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHECCC
RVPDLTETPTPSSTSTITPVPCQPAVSHQLILNAPSQVQVGDMFTMTVDYQNMSAPRMEI
CCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCEEECEEEEEEEECCCCCCCEEEE
MLSSSELAQFDPPLTMPCRYSEHPTQCSTITLRATAPGMLTINGRAIADMFVGDGWTFGY
EECCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCEEEEEEECCCEEECC
TSARNPINVQVHDGLPYKLFIPLAKNQ
CCCCCCEEEEEECCCCEEEEEEEECCC
>Mature Secondary Structure
MDNRRLALLVSLCAVLFAFAVAKNPGLTNAKVRLTETPTPSEISIATSSSIVPSPNSTSI
CCCCEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEE
MTPTVICPTYYLFESDAQAHIPNSSPTRTPVPTPNIDPCYVHPTLFLNGPSQVNVGELFT
ECCEEECCEEEEEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEE
LSITYENIGMQHTRIWFNDANLARFDPPLVMPCQYDRHPTRCERITLRATSVGTLVINAD
EEEEECCCCCEEEEEEEECCCCEECCCCEEECCCCCCCCCCEEEEEEEEEEEEEEEEECC
ARGESFHYGWYWSSAAARTPLTINVIDPNGTPVPTPTCVPATLTPTSTAQPTYTPTVVGQ
CCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHECCC
RVPDLTETPTPSSTSTITPVPCQPAVSHQLILNAPSQVQVGDMFTMTVDYQNMSAPRMEI
CCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCEEECEEEEEEEECCCCCCCEEEE
MLSSSELAQFDPPLTMPCRYSEHPTQCSTITLRATAPGMLTINGRAIADMFVGDGWTFGY
EECCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCEEEEEEECCCEEECC
TSARNPINVQVHDGLPYKLFIPLAKNQ
CCCCCCEEEEEECCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA