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The map label for this gene is ybiK [C]

Identifier: 159899030

GI number: 159899030

Start: 3207232

End: 3208146

Strand: Reverse

Name: ybiK [C]

Synonym: Haur_2511

Alternate gene names: 159899030

Gene position: 3208146-3207232 (Counterclockwise)

Preceding gene: 159899036

Following gene: 159899017

Centisome position: 50.55

GC content: 56.28

Gene sequence:

>915_bases
ATGATCGCCCTGATTGTCCATGGTGGGGCTTGGAATATGCCCGATGATCAAGTTGAGGCCCACAAACAAGGCTGTTTGGC
GGCACTAGCGGCTGGTTGGGCTGTGTTGGCGCAAGGGGGAACTGCGCTTGATGCAGTTGAGGCAGCGGTGCGGGTGCTCG
AAGATGACCCGACATTTGATGCTGGGGTGGGTTCGTTTCTCAATGCGATTGGCGAAGTTGAATTGGATGCAGGGATTATG
GATGGCGCAAGCATGCGGGCTGGCTCAGTCGCCGCAGTCCAACGGGTGCGCCATCCTATCAGTGTTGCTCGTCAAGTGCT
CGAAAGCGATTATGTATTGATTGTTGGCAATGGCGCTGAACAATTTGCAATCGAGCATGGCGCGGAGTTGTGCGATCCGG
CGGAGTTGGTGGTGGAGCGCGAACGCCAGCGGTGGCAGGATCAACAAGCTAACCCGCAATATAAGGGCCGTGATGCGTTT
CATTCGGCCCATGATACGGTTGGGGCGGTGGCGCTCGATAGTTTTGGCACAATTGCCGCCGCTACCTCGACCGGAGGGAT
TCCCAATAAATTGCCGGGACGGGTTGGCGATTCGCCCTTGGTTGGCAGTGGTTTATATGCCGATAACGAAACTGGCGGCT
GCTCAACAACTGGTTGGGGCGAGTCGATTATGAAGGTTTGCCTTGCCAAAAGCGTGGCTGATCAGCTACGAACTGCGACC
CCACATGAGGCGGCCAAAGCCAATATTGCCTTTTTGGAGCGGCGGGTGCAAGGCTTGGCGGGTTGTATCGTGTTGAATGC
CCAAGGTGAATTTGGCTGGGCGCATAATACGCCGCGCATGGCGTTTGCCTATCAACGTGGCGATGAGCCAGCTGTGGCAG
CGGTGCACGCCGATGAGCCATTGTTGAACGATTAA

Upstream 100 bases:

>100_bases
CTCATCTGACCCCTAGCCCCTGACTCCTGACCCCCAACCTCAAGAATTCGATTAAAATACCAGCATTGAAGCATTCATTC
TTCGCAGCAAAGGAGCAGCG

Downstream 100 bases:

>100_bases
TTCAATTTGGCTGGTTGGAAAGCCACGTTCAACCAGCCAACCATGTTATTCAACGCTACCGTTGACCCAATCTTCAAGCC
ATGGCTGAAATTTGACCGGA

Product: asparaginase

Products: NA

Alternate protein names: L-asparagine amidohydrolase [H]

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MIALIVHGGAWNMPDDQVEAHKQGCLAALAAGWAVLAQGGTALDAVEAAVRVLEDDPTFDAGVGSFLNAIGEVELDAGIM
DGASMRAGSVAAVQRVRHPISVARQVLESDYVLIVGNGAEQFAIEHGAELCDPAELVVERERQRWQDQQANPQYKGRDAF
HSAHDTVGAVALDSFGTIAAATSTGGIPNKLPGRVGDSPLVGSGLYADNETGGCSTTGWGESIMKVCLAKSVADQLRTAT
PHEAAKANIAFLERRVQGLAGCIVLNAQGEFGWAHNTPRMAFAYQRGDEPAVAAVHADEPLLND

Sequences:

>Translated_304_residues
MIALIVHGGAWNMPDDQVEAHKQGCLAALAAGWAVLAQGGTALDAVEAAVRVLEDDPTFDAGVGSFLNAIGEVELDAGIM
DGASMRAGSVAAVQRVRHPISVARQVLESDYVLIVGNGAEQFAIEHGAELCDPAELVVERERQRWQDQQANPQYKGRDAF
HSAHDTVGAVALDSFGTIAAATSTGGIPNKLPGRVGDSPLVGSGLYADNETGGCSTTGWGESIMKVCLAKSVADQLRTAT
PHEAAKANIAFLERRVQGLAGCIVLNAQGEFGWAHNTPRMAFAYQRGDEPAVAAVHADEPLLND
>Mature_304_residues
MIALIVHGGAWNMPDDQVEAHKQGCLAALAAGWAVLAQGGTALDAVEAAVRVLEDDPTFDAGVGSFLNAIGEVELDAGIM
DGASMRAGSVAAVQRVRHPISVARQVLESDYVLIVGNGAEQFAIEHGAELCDPAELVVERERQRWQDQQANPQYKGRDAF
HSAHDTVGAVALDSFGTIAAATSTGGIPNKLPGRVGDSPLVGSGLYADNETGGCSTTGWGESIMKVCLAKSVADQLRTAT
PHEAAKANIAFLERRVQGLAGCIVLNAQGEFGWAHNTPRMAFAYQRGDEPAVAAVHADEPLLND

Specific function: Unknown

COG id: COG1446

COG function: function code E; Asparaginase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Ntn-hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI145275202, Length=271, Percent_Identity=45.7564575645756, Blast_Score=211, Evalue=9e-55,
Organism=Homo sapiens, GI145275200, Length=271, Percent_Identity=45.7564575645756, Blast_Score=211, Evalue=9e-55,
Organism=Homo sapiens, GI98991769, Length=338, Percent_Identity=31.3609467455621, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI285002251, Length=280, Percent_Identity=32.5, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI285002253, Length=280, Percent_Identity=30.3571428571429, Blast_Score=93, Evalue=4e-19,
Organism=Escherichia coli, GI1787050, Length=304, Percent_Identity=37.171052631579, Blast_Score=157, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI32564649, Length=247, Percent_Identity=28.7449392712551, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17569239, Length=274, Percent_Identity=28.1021897810219, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI18921183, Length=307, Percent_Identity=39.0879478827362, Blast_Score=201, Evalue=6e-52,
Organism=Drosophila melanogaster, GI21357893, Length=343, Percent_Identity=29.7376093294461, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24652135, Length=291, Percent_Identity=31.2714776632302, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI221330102, Length=291, Percent_Identity=31.2714776632302, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24655553, Length=241, Percent_Identity=31.9502074688797, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24657358, Length=235, Percent_Identity=29.7872340425532, Blast_Score=82, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000246 [H]

Pfam domain/function: PF01112 Asparaginase_2 [H]

EC number: =3.5.1.1 [H]

Molecular weight: Translated: 31831; Mature: 31831

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALIVHGGAWNMPDDQVEAHKQGCLAALAAGWAVLAQGGTALDAVEAAVRVLEDDPTFD
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCH
AGVGSFLNAIGEVELDAGIMDGASMRAGSVAAVQRVRHPISVARQVLESDYVLIVGNGAE
HHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHH
QFAIEHGAELCDPAELVVERERQRWQDQQANPQYKGRDAFHSAHDTVGAVALDSFGTIAA
HHHHHHCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
ATSTGGIPNKLPGRVGDSPLVGSGLYADNETGGCSTTGWGESIMKVCLAKSVADQLRTAT
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PHEAAKANIAFLERRVQGLAGCIVLNAQGEFGWAHNTPRMAFAYQRGDEPAVAAVHADEP
CHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC
LLND
CCCC
>Mature Secondary Structure
MIALIVHGGAWNMPDDQVEAHKQGCLAALAAGWAVLAQGGTALDAVEAAVRVLEDDPTFD
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCH
AGVGSFLNAIGEVELDAGIMDGASMRAGSVAAVQRVRHPISVARQVLESDYVLIVGNGAE
HHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHH
QFAIEHGAELCDPAELVVERERQRWQDQQANPQYKGRDAFHSAHDTVGAVALDSFGTIAA
HHHHHHCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
ATSTGGIPNKLPGRVGDSPLVGSGLYADNETGGCSTTGWGESIMKVCLAKSVADQLRTAT
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PHEAAKANIAFLERRVQGLAGCIVLNAQGEFGWAHNTPRMAFAYQRGDEPAVAAVHADEP
CHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC
LLND
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA