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The map label for this gene is fecI [C]

Identifier: 159899015

GI number: 159899015

Start: 3191325

End: 3191858

Strand: Reverse

Name: fecI [C]

Synonym: Haur_2496

Alternate gene names: 159899015

Gene position: 3191858-3191325 (Counterclockwise)

Preceding gene: 159899017

Following gene: 159899014

Centisome position: 50.29

GC content: 50.0

Gene sequence:

>534_bases
ATGATTATTCCATATGTACATACAACTGAACGTGAGACGGCAGTTACGCAAGTAATTAGCCAATGGTTTGATGACCATCA
CGATGCCATGTTTCGCTACCTGACGCGAATTGTGGGGCAGCCGGAACAAGCAGCCGATTTGGTACAAGAAACCTTCCTCC
GCGCGATGAAGGTGCTTGACCCAACGCTCTTGCCTGCTATTCCCCAAGCTTGGCTCTTTCGGATCGCCAGCAACCTTGCA
TTAGATCATCTGCGTCGGCAGCGGCGTTGGAGTTGGTTTATGCGCAGCTGGCAACCAGAAACCAACAATTTTGATCAGCA
TGTCGAAACAACCCAAGCAATTCGTGGCTGCTTAGCCAAACTCAAGCCGCAAGATGCTGAAGTTCTGTTGATGGTGCACT
ACGCTGGTTGTAGCCCAGCCGAAGTCGCCAAATTAAATGGTGAAGAATTAGGCGCAGTCCGCAAACGATTATCACGGGCC
CGTGATCGTTTTCGGAATTTATACGAGGAGGAACGTGGCCATGAAGTGTCATGA

Upstream 100 bases:

>100_bases
CGATGGTGATTTTAGTCAATTTTGATCAAGCCTGTCCACTTTTGGGCAGGCTGTTCGTCATTAATTGCAGACAGCATGCT
ACGGCCGGGGCAAGCAGCCT

Downstream 100 bases:

>100_bases
TCTTCAGCCGCTCCTCAGCGATTGGCAACATCTGACTGAGGATGAATGGCAATTGGTGAATACTCACGTTGCTGAATGTG
CTACTTGTCGTCAGGTGTTG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; Group3 RNA Polymerase Sigma Factor; Alanine-Rich Protein; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MIIPYVHTTERETAVTQVISQWFDDHHDAMFRYLTRIVGQPEQAADLVQETFLRAMKVLDPTLLPAIPQAWLFRIASNLA
LDHLRRQRRWSWFMRSWQPETNNFDQHVETTQAIRGCLAKLKPQDAEVLLMVHYAGCSPAEVAKLNGEELGAVRKRLSRA
RDRFRNLYEEERGHEVS

Sequences:

>Translated_177_residues
MIIPYVHTTERETAVTQVISQWFDDHHDAMFRYLTRIVGQPEQAADLVQETFLRAMKVLDPTLLPAIPQAWLFRIASNLA
LDHLRRQRRWSWFMRSWQPETNNFDQHVETTQAIRGCLAKLKPQDAEVLLMVHYAGCSPAEVAKLNGEELGAVRKRLSRA
RDRFRNLYEEERGHEVS
>Mature_177_residues
MIIPYVHTTERETAVTQVISQWFDDHHDAMFRYLTRIVGQPEQAADLVQETFLRAMKVLDPTLLPAIPQAWLFRIASNLA
LDHLRRQRRWSWFMRSWQPETNNFDQHVETTQAIRGCLAKLKPQDAEVLLMVHYAGCSPAEVAKLNGEELGAVRKRLSRA
RDRFRNLYEEERGHEVS

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20697; Mature: 20697

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIPYVHTTERETAVTQVISQWFDDHHDAMFRYLTRIVGQPEQAADLVQETFLRAMKVLD
CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
PTLLPAIPQAWLFRIASNLALDHLRRQRRWSWFMRSWQPETNNFDQHVETTQAIRGCLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LKPQDAEVLLMVHYAGCSPAEVAKLNGEELGAVRKRLSRARDRFRNLYEEERGHEVS
CCCCCCCEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIIPYVHTTERETAVTQVISQWFDDHHDAMFRYLTRIVGQPEQAADLVQETFLRAMKVLD
CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
PTLLPAIPQAWLFRIASNLALDHLRRQRRWSWFMRSWQPETNNFDQHVETTQAIRGCLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LKPQDAEVLLMVHYAGCSPAEVAKLNGEELGAVRKRLSRARDRFRNLYEEERGHEVS
CCCCCCCEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA