| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898793
Identifier: 159898793
GI number: 159898793
Start: 2907598
End: 2908737
Strand: Reverse
Name: 159898793
Synonym: Haur_2272
Alternate gene names: NA
Gene position: 2908737-2907598 (Counterclockwise)
Preceding gene: 159898800
Following gene: 159898792
Centisome position: 45.83
GC content: 52.89
Gene sequence:
>1140_bases ATGGATGGACTGAACAAACCTCATTCACGGCGAAAGTTTCTGACGACGAGCGGCTTGGCGGCAGTTGCAGCTGGTAGCGT GTTGGGCAAGCACGGGCAGGCCGCAGCGGCTCCAGCGAGTGCCCCCAATTCAGGCTTAACCGCAACCAATGCGATGGAAT TGCCACCAAGTGCCAAAATCAGTATTCGCTGCTTGCGCTCACTGACCATGCTAACCATGAGTTCGCAGCTAACTGATCCC GCATTTAGTGCCGAAGTCTACGAAATTGGCCTCAAAGATCTCGAAAGTAACCTACAAGAGCTAATCGGACTGGGCACCAG CGATCTGGTGAGCTATCGGCCAAACCCCGAAGAGAGTTTGCCGACGCGGCCATGGTGGTGGCCCAAACGACGTGTTCGCC ATTATCGCGGCCAACTCAGCCATGAATCGATCCCCGACGCTGGCCAACTTATCTTGGATATTATACGCAGCCTTGATGGC TATACGGTAGCATTTTATTCGCAACAGCTTGAATTTGCCGAATTGAGCCAACATTTGGCCTTGGTTGAAATGCAAACCCA GTTCCAACGCTTGATCAATGCGCCAAGTTTGGCGGGCTTATTCCCTGATGACGATGATATTTGCCCGTGGTGGTGGCCGT ATCCCCAGCCGAATTGGCTGCATTTGCACGACCGTGATTGGCCTGTACCACCAATTCCGATTCCTCCCTGCGATTTACGC GAGTTGGCGGTGAATGTGCAGCGCGGTTTAATTCAACTGGCAGTTGCTGAGCGCTATAGCGATAGCGAACAAGCCAGCTA TCGGCGTGACAGTATCCGCCCAACCATTCACGATCTGGCCAATCAGCTGTCGGCCTATGCTGGCACACTAACAGGTTGGC TTGAGCATGATATCGTCGATCGACCACCACCAGATCCTAACGATCCTTATCCATGGCCATTCCACGATGGTTTAATTGAT GAATTGGTTGATTTTGCCGATCGTCCGCCACCACAACCCTATCGAATTAAACTTGGCGACCAAATTATGCGAGCGAGCCA CTTGGTTGGCGTGGCCTGCCACATTCGGGAACGGCACTTGGCTGGGCGGTTGCAGGATGCCAGTCTGACCCAAATTAAGG ATCTCGCCTACCAAATCTAA
Upstream 100 bases:
>100_bases CCATCGGAAAAGCCTTCAATAGGTTGGTAGAAAATGTCAAGTTTTAAGCAATATATTGAGCTAAGCTAGCGCCATCGAAT TAACCAACAGGAGTTGTGTG
Downstream 100 bases:
>100_bases ACTGGACGTGCTTAGATTTAGCCCTTTTTCCAGATTATGGAAGAAGGGCTTTTGGTTGTTACTCTCATACCATCGCCTAT CGCAACACCATGATTTAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MDGLNKPHSRRKFLTTSGLAAVAAGSVLGKHGQAAAAPASAPNSGLTATNAMELPPSAKISIRCLRSLTMLTMSSQLTDP AFSAEVYEIGLKDLESNLQELIGLGTSDLVSYRPNPEESLPTRPWWWPKRRVRHYRGQLSHESIPDAGQLILDIIRSLDG YTVAFYSQQLEFAELSQHLALVEMQTQFQRLINAPSLAGLFPDDDDICPWWWPYPQPNWLHLHDRDWPVPPIPIPPCDLR ELAVNVQRGLIQLAVAERYSDSEQASYRRDSIRPTIHDLANQLSAYAGTLTGWLEHDIVDRPPPDPNDPYPWPFHDGLID ELVDFADRPPPQPYRIKLGDQIMRASHLVGVACHIRERHLAGRLQDASLTQIKDLAYQI
Sequences:
>Translated_379_residues MDGLNKPHSRRKFLTTSGLAAVAAGSVLGKHGQAAAAPASAPNSGLTATNAMELPPSAKISIRCLRSLTMLTMSSQLTDP AFSAEVYEIGLKDLESNLQELIGLGTSDLVSYRPNPEESLPTRPWWWPKRRVRHYRGQLSHESIPDAGQLILDIIRSLDG YTVAFYSQQLEFAELSQHLALVEMQTQFQRLINAPSLAGLFPDDDDICPWWWPYPQPNWLHLHDRDWPVPPIPIPPCDLR ELAVNVQRGLIQLAVAERYSDSEQASYRRDSIRPTIHDLANQLSAYAGTLTGWLEHDIVDRPPPDPNDPYPWPFHDGLID ELVDFADRPPPQPYRIKLGDQIMRASHLVGVACHIRERHLAGRLQDASLTQIKDLAYQI >Mature_379_residues MDGLNKPHSRRKFLTTSGLAAVAAGSVLGKHGQAAAAPASAPNSGLTATNAMELPPSAKISIRCLRSLTMLTMSSQLTDP AFSAEVYEIGLKDLESNLQELIGLGTSDLVSYRPNPEESLPTRPWWWPKRRVRHYRGQLSHESIPDAGQLILDIIRSLDG YTVAFYSQQLEFAELSQHLALVEMQTQFQRLINAPSLAGLFPDDDDICPWWWPYPQPNWLHLHDRDWPVPPIPIPPCDLR ELAVNVQRGLIQLAVAERYSDSEQASYRRDSIRPTIHDLANQLSAYAGTLTGWLEHDIVDRPPPDPNDPYPWPFHDGLID ELVDFADRPPPQPYRIKLGDQIMRASHLVGVACHIRERHLAGRLQDASLTQIKDLAYQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42525; Mature: 42525
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGLNKPHSRRKFLTTSGLAAVAAGSVLGKHGQAAAAPASAPNSGLTATNAMELPPSAKI CCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH SIRCLRSLTMLTMSSQLTDPAFSAEVYEIGLKDLESNLQELIGLGTSDLVSYRPNPEESL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC PTRPWWWPKRRVRHYRGQLSHESIPDAGQLILDIIRSLDGYTVAFYSQQLEFAELSQHLA CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH LVEMQTQFQRLINAPSLAGLFPDDDDICPWWWPYPQPNWLHLHDRDWPVPPIPIPPCDLR HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHH ELAVNVQRGLIQLAVAERYSDSEQASYRRDSIRPTIHDLANQLSAYAGTLTGWLEHDIVD HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC RPPPDPNDPYPWPFHDGLIDELVDFADRPPPQPYRIKLGDQIMRASHLVGVACHIRERHL CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH AGRLQDASLTQIKDLAYQI HCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MDGLNKPHSRRKFLTTSGLAAVAAGSVLGKHGQAAAAPASAPNSGLTATNAMELPPSAKI CCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH SIRCLRSLTMLTMSSQLTDPAFSAEVYEIGLKDLESNLQELIGLGTSDLVSYRPNPEESL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC PTRPWWWPKRRVRHYRGQLSHESIPDAGQLILDIIRSLDGYTVAFYSQQLEFAELSQHLA CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH LVEMQTQFQRLINAPSLAGLFPDDDDICPWWWPYPQPNWLHLHDRDWPVPPIPIPPCDLR HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHH ELAVNVQRGLIQLAVAERYSDSEQASYRRDSIRPTIHDLANQLSAYAGTLTGWLEHDIVD HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC RPPPDPNDPYPWPFHDGLIDELVDFADRPPPQPYRIKLGDQIMRASHLVGVACHIRERHL CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH AGRLQDASLTQIKDLAYQI HCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA