| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is cwhA [H]
Identifier: 159898791
GI number: 159898791
Start: 2903915
End: 2906161
Strand: Direct
Name: cwhA [H]
Synonym: Haur_2270
Alternate gene names: 159898791
Gene position: 2903915-2906161 (Clockwise)
Preceding gene: 159898789
Following gene: 159898794
Centisome position: 45.76
GC content: 50.87
Gene sequence:
>2247_bases ATGAACCATCGTTGGTTACGATCACGTTTGCTGATCGTTTTTGTTATTTTAGGGCTGGGCCTTGGCTATTTGCCATTGCC AAGCTTTGCCAACAGCCCAAACCCAGCTGCCAGCAATTTGCATATGGCTTTCACCGCAGCTGCCGCCGAATTCCATGTAC CAAGCGAAGTATTGCTAGCGCTGAGCTACAATCTTTCACGCTGGGAGCATCACGCAGGCCAGCCCAGCACCAGCGGCGGC TATGGAATCATGCATTTAACTCAAATCGATTTGAGCCATTGGCACGCCAGCAAAGGCCTTGATTGGGCCACACTACTTAA ACAACCTGACGAATTGCAAACCTTAACTCAAGCTGCCAAGCTAATCGGCCAACCACCCAGCACATTAATCAATGATCCAG TGCAGAATATTCGCGGTGGCGCGGCGTTGTTGGCCGAATATAGCCGCAGCATCAACCCACGATTGCCCAACAATCTCGCC GATTGGTATGGCGCGGTGGTGTTGTATAGCGGCGGCAAAGAGCGTTCGACCGCGTTTGGCTTCGCCGATCGGGTCTACGC CACCTTGCAGCAAGGTGCAACTCGTAGCCTCGATAACGGCGAAGCGCTAACGTTGGCTCCAAGTACCATCACAATCAATC GCCAAAGTGCCGCTAGCTTGCAGCTGTATTTGGGTGATGATTTTCCGTTGGATTGCCCAACGACGCTCAATTGTGAAGTG ATTCCAGCGGCCTATGCCTTGAATAACCCCAATGATCGCAGTGATTATGGTAACTACGATTTAGCCAATCGCCCAGCCGA TGGCTTAGATTTTCGCTATATTTTGATTCATGACACCGAAATCACCTACACCCAAACCGTCAATGTGTTTCAAAATCCAG CCACTGGTGCATCAACCCATTATGTCATTCGGGCCAGCGATGGGCATATTGCCCAAATGGTTGAGAATAAAAACGTGCCT TGGCATGCAGGCAATTGGGATGTTAACGGCCACTCGATCGGCATCGAACACGAAGGTATTGCGATTGAAGGCGCAACCTG GTATAGCGAGGCCATGTATCAAGCCTCGGCGCAACTCACCCGCTATCTCGCCGATAAATACCAGATTCCATTAGATCGTA GCCATATTATTGGCCATGACGAGTTGCCTGGCCCGCTGCCGCAACATCAAGCAGGCATGCACTGGGACCCAGGCCCGTTT TGGGATTGGGCGCATTATATGGATTTGGTGCGTGGTGGCCCCGCACCCATCAGCAATCCCGATCCGCAGTTGGTTACCAT TAATCCCAATTTCGATAGCAATATGCCCGCTTTGACCTATTGTTATAGCAGCAACGATTGCCGCGATGTACCAACTCAAA GCGCTAATTTTCTCTATTTGCACACGCAACCCAACGCCAACTCGCCCTTGATTACCAATCAATACATTGGCTCAACTCCG ACTCACGCCAACAACTGGAGCAACAAAGTTGTTACAGGCCAAACCTATGTTGTCGCTGATCAACAGGGCGATTGGCAGGC GATTTATTTTGGTGGCCAGAAAGCTTGGTTCCACAACCCCGATGGCTCAAATACCACGGCGGGACAAGGGCTAAAAGTGC GACCAAAAGTTGGTCAAGCCACTATTCCAGTCTATGGGCGAGCTTACCCTGAAGCAGCTGCCTATCCTCAAGGCATTTCA CCGCAGGCTATCACCCCAATTTACAGCTTACCCGCCGATAATATGGTGGTGGCAACGCAGCTTTACACCAGCACCTACTA CTATTCGCCAGTCTATACCCCAACCCTTGATCCAAGCTCACATATCGTTGTCAGCGGCCAAACCAAGTATTATCAAATTA ATTTCAACCATCGTTTTGGCTTTCTTAAAGCGAGCGATGTCGAAGTGCAATCGAGCGTTCTTAGTTTGACCACGCCTAAA CTTGCGCAAAGCAATCTGCATGGTACGAGCATCACCTACACCCTGACATTGCGCAACCTCAGCCAACAAACTGTGCCAAT TAGCCTCAACCTCATCGGCAATACTTGGCTAACCACCATAACGAGTGCCATGCCGAACGACCTTGGGCCAAATGCCAGCC AAACGATCACGCTGCGCGTCGATCTGCCGGCGGGGCCAAGCCCAGCGGCTGATCAAGTGTGGGTTAAAGCTCAAACCAGC GCCGACCCTGAACGCAGCGCTGTGCTCTTGCTGCATTCAAGCGCCGAAACTAATATCAACTTTTTACCGCTAATTACCAA GCAATAA
Upstream 100 bases:
>100_bases CGTCGATCAAAACTCCTCAGCCAATTCTCAGTTCTTAATTAATTTTAAGCAGGTATACTAAACCTACGAGTTAGGTCTTT TAGTTGTTGAGGAAGCAATA
Downstream 100 bases:
>100_bases ATTCAAAAACGCCGTCTAGTTTAGGGCTAGACGGCGTTTTTAGGTTAAAATTCGACTGGCATTTCGATCATGCCGCGAAT CAGCATGCCAGGCCGCCAAA
Product: N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MNHRWLRSRLLIVFVILGLGLGYLPLPSFANSPNPAASNLHMAFTAAAAEFHVPSEVLLALSYNLSRWEHHAGQPSTSGG YGIMHLTQIDLSHWHASKGLDWATLLKQPDELQTLTQAAKLIGQPPSTLINDPVQNIRGGAALLAEYSRSINPRLPNNLA DWYGAVVLYSGGKERSTAFGFADRVYATLQQGATRSLDNGEALTLAPSTITINRQSAASLQLYLGDDFPLDCPTTLNCEV IPAAYALNNPNDRSDYGNYDLANRPADGLDFRYILIHDTEITYTQTVNVFQNPATGASTHYVIRASDGHIAQMVENKNVP WHAGNWDVNGHSIGIEHEGIAIEGATWYSEAMYQASAQLTRYLADKYQIPLDRSHIIGHDELPGPLPQHQAGMHWDPGPF WDWAHYMDLVRGGPAPISNPDPQLVTINPNFDSNMPALTYCYSSNDCRDVPTQSANFLYLHTQPNANSPLITNQYIGSTP THANNWSNKVVTGQTYVVADQQGDWQAIYFGGQKAWFHNPDGSNTTAGQGLKVRPKVGQATIPVYGRAYPEAAAYPQGIS PQAITPIYSLPADNMVVATQLYTSTYYYSPVYTPTLDPSSHIVVSGQTKYYQINFNHRFGFLKASDVEVQSSVLSLTTPK LAQSNLHGTSITYTLTLRNLSQQTVPISLNLIGNTWLTTITSAMPNDLGPNASQTITLRVDLPAGPSPAADQVWVKAQTS ADPERSAVLLLHSSAETNINFLPLITKQ
Sequences:
>Translated_748_residues MNHRWLRSRLLIVFVILGLGLGYLPLPSFANSPNPAASNLHMAFTAAAAEFHVPSEVLLALSYNLSRWEHHAGQPSTSGG YGIMHLTQIDLSHWHASKGLDWATLLKQPDELQTLTQAAKLIGQPPSTLINDPVQNIRGGAALLAEYSRSINPRLPNNLA DWYGAVVLYSGGKERSTAFGFADRVYATLQQGATRSLDNGEALTLAPSTITINRQSAASLQLYLGDDFPLDCPTTLNCEV IPAAYALNNPNDRSDYGNYDLANRPADGLDFRYILIHDTEITYTQTVNVFQNPATGASTHYVIRASDGHIAQMVENKNVP WHAGNWDVNGHSIGIEHEGIAIEGATWYSEAMYQASAQLTRYLADKYQIPLDRSHIIGHDELPGPLPQHQAGMHWDPGPF WDWAHYMDLVRGGPAPISNPDPQLVTINPNFDSNMPALTYCYSSNDCRDVPTQSANFLYLHTQPNANSPLITNQYIGSTP THANNWSNKVVTGQTYVVADQQGDWQAIYFGGQKAWFHNPDGSNTTAGQGLKVRPKVGQATIPVYGRAYPEAAAYPQGIS PQAITPIYSLPADNMVVATQLYTSTYYYSPVYTPTLDPSSHIVVSGQTKYYQINFNHRFGFLKASDVEVQSSVLSLTTPK LAQSNLHGTSITYTLTLRNLSQQTVPISLNLIGNTWLTTITSAMPNDLGPNASQTITLRVDLPAGPSPAADQVWVKAQTS ADPERSAVLLLHSSAETNINFLPLITKQ >Mature_748_residues MNHRWLRSRLLIVFVILGLGLGYLPLPSFANSPNPAASNLHMAFTAAAAEFHVPSEVLLALSYNLSRWEHHAGQPSTSGG YGIMHLTQIDLSHWHASKGLDWATLLKQPDELQTLTQAAKLIGQPPSTLINDPVQNIRGGAALLAEYSRSINPRLPNNLA DWYGAVVLYSGGKERSTAFGFADRVYATLQQGATRSLDNGEALTLAPSTITINRQSAASLQLYLGDDFPLDCPTTLNCEV IPAAYALNNPNDRSDYGNYDLANRPADGLDFRYILIHDTEITYTQTVNVFQNPATGASTHYVIRASDGHIAQMVENKNVP WHAGNWDVNGHSIGIEHEGIAIEGATWYSEAMYQASAQLTRYLADKYQIPLDRSHIIGHDELPGPLPQHQAGMHWDPGPF WDWAHYMDLVRGGPAPISNPDPQLVTINPNFDSNMPALTYCYSSNDCRDVPTQSANFLYLHTQPNANSPLITNQYIGSTP THANNWSNKVVTGQTYVVADQQGDWQAIYFGGQKAWFHNPDGSNTTAGQGLKVRPKVGQATIPVYGRAYPEAAAYPQGIS PQAITPIYSLPADNMVVATQLYTSTYYYSPVYTPTLDPSSHIVVSGQTKYYQINFNHRFGFLKASDVEVQSSVLSLTTPK LAQSNLHGTSITYTLTLRNLSQQTVPISLNLIGNTWLTTITSAMPNDLGPNASQTITLRVDLPAGPSPAADQVWVKAQTS ADPERSAVLLLHSSAETNINFLPLITKQ
Specific function: Antibacterial activity against Gram-positive bacteria M.luteus, S.aureus, E.faecalis and P.acidilactici and Gram- negative bacterium E.coli [H]
COG id: COG3023
COG function: function code V; Negative regulator of beta-lactamase expression
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002502 [H]
Pfam domain/function: PF01510 Amidase_2 [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 81904; Mature: 81904
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHRWLRSRLLIVFVILGLGLGYLPLPSFANSPNPAASNLHMAFTAAAAEFHVPSEVLLA CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHCCCCHHHEEE LSYNLSRWEHHAGQPSTSGGYGIMHLTQIDLSHWHASKGLDWATLLKQPDELQTLTQAAK EECCHHHHHHCCCCCCCCCCEEEEEEEEEEHHHHHCCCCCCHHHHHCCCHHHHHHHHHHH LIGQPPSTLINDPVQNIRGGAALLAEYSRSINPRLPNNLADWYGAVVLYSGGKERSTAFG HHCCCCHHHHHCCHHHHCCHHHHHHHHHHCCCCCCCCHHHHHCCEEEEECCCCCCCHHHH FADRVYATLQQGATRSLDNGEALTLAPSTITINRQSAASLQLYLGDDFPLDCPTTLNCEV HHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEE IPAAYALNNPNDRSDYGNYDLANRPADGLDFRYILIHDTEITYTQTVNVFQNPATGASTH EEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEEEECCCCCCCCEE YVIRASDGHIAQMVENKNVPWHAGNWDVNGHSIGIEHEGIAIEGATWYSEAMYQASAQLT EEEEECCCCHHHHHHCCCCCEECCCCCCCCCEECEECCCEEEECCHHHHHHHHHHHHHHH RYLADKYQIPLDRSHIIGHDELPGPLPQHQAGMHWDPGPFWDWAHYMDLVRGGPAPISNP HHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC DPQLVTINPNFDSNMPALTYCYSSNDCRDVPTQSANFLYLHTQPNANSPLITNQYIGSTP CCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCC THANNWSNKVVTGQTYVVADQQGDWQAIYFGGQKAWFHNPDGSNTTAGQGLKVRPKVGQA CCCCCCCCEEEECEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCEEECCCCCCE TIPVYGRAYPEAAAYPQGISPQAITPIYSLPADNMVVATQLYTSTYYYSPVYTPTLDPSS EECCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEEEEECCEECCCCCCCC HIVVSGQTKYYQINFNHRFGFLKASDVEVQSSVLSLTTPKLAQSNLHGTSITYTLTLRNL EEEEECCEEEEEEEECCEEEEEEECCCHHHHHHHEECCCHHHHCCCCCCEEEEEEEEECC SQQTVPISLNLIGNTWLTTITSAMPNDLGPNASQTITLRVDLPAGPSPAADQVWVKAQTS CCCEEEEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECC ADPERSAVLLLHSSAETNINFLPLITKQ CCCCCCEEEEEECCCCCCCEEEEEEECC >Mature Secondary Structure MNHRWLRSRLLIVFVILGLGLGYLPLPSFANSPNPAASNLHMAFTAAAAEFHVPSEVLLA CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHCCCCHHHEEE LSYNLSRWEHHAGQPSTSGGYGIMHLTQIDLSHWHASKGLDWATLLKQPDELQTLTQAAK EECCHHHHHHCCCCCCCCCCEEEEEEEEEEHHHHHCCCCCCHHHHHCCCHHHHHHHHHHH LIGQPPSTLINDPVQNIRGGAALLAEYSRSINPRLPNNLADWYGAVVLYSGGKERSTAFG HHCCCCHHHHHCCHHHHCCHHHHHHHHHHCCCCCCCCHHHHHCCEEEEECCCCCCCHHHH FADRVYATLQQGATRSLDNGEALTLAPSTITINRQSAASLQLYLGDDFPLDCPTTLNCEV HHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEE IPAAYALNNPNDRSDYGNYDLANRPADGLDFRYILIHDTEITYTQTVNVFQNPATGASTH EEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEEEECCCCCCCCEE YVIRASDGHIAQMVENKNVPWHAGNWDVNGHSIGIEHEGIAIEGATWYSEAMYQASAQLT EEEEECCCCHHHHHHCCCCCEECCCCCCCCCEECEECCCEEEECCHHHHHHHHHHHHHHH RYLADKYQIPLDRSHIIGHDELPGPLPQHQAGMHWDPGPFWDWAHYMDLVRGGPAPISNP HHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC DPQLVTINPNFDSNMPALTYCYSSNDCRDVPTQSANFLYLHTQPNANSPLITNQYIGSTP CCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCC THANNWSNKVVTGQTYVVADQQGDWQAIYFGGQKAWFHNPDGSNTTAGQGLKVRPKVGQA CCCCCCCCEEEECEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCEEECCCCCCE TIPVYGRAYPEAAAYPQGISPQAITPIYSLPADNMVVATQLYTSTYYYSPVYTPTLDPSS EECCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEEEEECCEECCCCCCCC HIVVSGQTKYYQINFNHRFGFLKASDVEVQSSVLSLTTPKLAQSNLHGTSITYTLTLRNL EEEEECCEEEEEEEECCEEEEEEECCCHHHHHHHEECCCHHHHCCCCCCEEEEEEEEECC SQQTVPISLNLIGNTWLTTITSAMPNDLGPNASQTITLRVDLPAGPSPAADQVWVKAQTS CCCEEEEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECC ADPERSAVLLLHSSAETNINFLPLITKQ CCCCCCEEEEEECCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10833271 [H]