| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898786
Identifier: 159898786
GI number: 159898786
Start: 2897430
End: 2898572
Strand: Direct
Name: 159898786
Synonym: Haur_2265
Alternate gene names: NA
Gene position: 2897430-2898572 (Clockwise)
Preceding gene: 159898783
Following gene: 159898787
Centisome position: 45.65
GC content: 49.96
Gene sequence:
>1143_bases ATGAAAAGCCATTTCACGCGCATTGTGGCGCACGTGTTCACTGTCGGACTCATGGCCTCGTTGATCAGTTGTGGGAGCAC GCAAGTAACGCCTACCGTCAGCCAAAGTGCCCAATCAGTTTCAGCCTCAAACGCCGATCCCGCTTTAGTTGAAGCCTCAA AAAAAGAAGCCGATGGTATTTTGATTTATTCGATTATGAGTGAGAAAAATTGGCAGCCAGTGATTCAAGGCTTTAACGCC AAATATCCTTGGATCAAAGTAACAACTGCTGATTTAGGAGCTTACGAGGTATTCGAACGCTACTACACCGAAGCCGCTGG CAATGCCCGTACTGCCGATTTTATCTCCACCACCGCGCCTGATGGCTGGATCAACTTTATCGATAAAGGCGAAGTCCAGT CGTATGTTTCCAGCGAAGATGCCCAAATTCCTGAGCTTGGCAAAATTGCTCAAGGGGTCTATGCCGCCTCAACCGATCCG ATGGTCTTTATTTGGAACAAGCAATTGGTCGCTGATCCGCCGCAAACTATGGCCGAACTGATCAGCATGATCGAAAAAGA CCCCAGCGCCATGCAAGACAAATTGGTGAGCTACGATGCCGATGGCGAAGGCTTTGGCTATGGTCTCAACTGGTTTTATA CCAAGGCCAAAGGTGCTGATGGTTGGAAAACTTTAGAAGCAATTGGTTCAAGCCAGCCCAAAATTTTAACCTCTGGCGGC AAGATGATCGATTCAGTGCTTTCGGGCGAATCCAGCATCGGCTACTTTGTCTCGAATATCACAGTTCAGCCACGCTTGGA AGCTGCTCAACAATTGCTTGGCTATAGCTTTGTGCCTGATGCTCAAGTTGTCGCGGTGCGGGGCATGGCAGTCACCAAAC ATGCTGCTAGCCCTAATTCAGCCAAATTGCTACTCGATTATATTCTCTCAGCCGAAGGACAAATGGCCTTCTCGCAAGGT GGCTTAACCGCCTATCGCCCCGACATTGCCGCCTCTGCGCCACTGCATCTTTCGCAAGTAAGCCAAGCGGTTGGGGGCGA GCAAAATATCATCTTCTCACGGCCCGATAAAGCCCTGGCTGACCCTCAACAACGCAGCCAGTTCCTCAACCAATGGAAAC AAGCCCTCGGTCGCAACCAATAA
Upstream 100 bases:
>100_bases TTAATTTTTACGTCGTTTTTACATTGATCAACTAAGCTACTACTCAATCCAGCGACGCACTGAACAACCCTCCTCTCAAA CAAGCGACGGAGTAAACCCA
Downstream 100 bases:
>100_bases GCCCCACTTAACTTAAATGGTGCTGGGTAGAGCGCTGTAGGCCAGTGAGCCGGCTTACAACGCTCTACCCAGCACCATCC AAGGAGTTTGCAGATGGCAG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: ABC-Type Fe3+ Transporter Periplasmic Protein; Iron ABC Transporter; HAMP Domain-Containing; Two-Component Sensor Histidine Kinase
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MKSHFTRIVAHVFTVGLMASLISCGSTQVTPTVSQSAQSVSASNADPALVEASKKEADGILIYSIMSEKNWQPVIQGFNA KYPWIKVTTADLGAYEVFERYYTEAAGNARTADFISTTAPDGWINFIDKGEVQSYVSSEDAQIPELGKIAQGVYAASTDP MVFIWNKQLVADPPQTMAELISMIEKDPSAMQDKLVSYDADGEGFGYGLNWFYTKAKGADGWKTLEAIGSSQPKILTSGG KMIDSVLSGESSIGYFVSNITVQPRLEAAQQLLGYSFVPDAQVVAVRGMAVTKHAASPNSAKLLLDYILSAEGQMAFSQG GLTAYRPDIAASAPLHLSQVSQAVGGEQNIIFSRPDKALADPQQRSQFLNQWKQALGRNQ
Sequences:
>Translated_380_residues MKSHFTRIVAHVFTVGLMASLISCGSTQVTPTVSQSAQSVSASNADPALVEASKKEADGILIYSIMSEKNWQPVIQGFNA KYPWIKVTTADLGAYEVFERYYTEAAGNARTADFISTTAPDGWINFIDKGEVQSYVSSEDAQIPELGKIAQGVYAASTDP MVFIWNKQLVADPPQTMAELISMIEKDPSAMQDKLVSYDADGEGFGYGLNWFYTKAKGADGWKTLEAIGSSQPKILTSGG KMIDSVLSGESSIGYFVSNITVQPRLEAAQQLLGYSFVPDAQVVAVRGMAVTKHAASPNSAKLLLDYILSAEGQMAFSQG GLTAYRPDIAASAPLHLSQVSQAVGGEQNIIFSRPDKALADPQQRSQFLNQWKQALGRNQ >Mature_380_residues MKSHFTRIVAHVFTVGLMASLISCGSTQVTPTVSQSAQSVSASNADPALVEASKKEADGILIYSIMSEKNWQPVIQGFNA KYPWIKVTTADLGAYEVFERYYTEAAGNARTADFISTTAPDGWINFIDKGEVQSYVSSEDAQIPELGKIAQGVYAASTDP MVFIWNKQLVADPPQTMAELISMIEKDPSAMQDKLVSYDADGEGFGYGLNWFYTKAKGADGWKTLEAIGSSQPKILTSGG KMIDSVLSGESSIGYFVSNITVQPRLEAAQQLLGYSFVPDAQVVAVRGMAVTKHAASPNSAKLLLDYILSAEGQMAFSQG GLTAYRPDIAASAPLHLSQVSQAVGGEQNIIFSRPDKALADPQQRSQFLNQWKQALGRNQ
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40992; Mature: 40992
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSHFTRIVAHVFTVGLMASLISCGSTQVTPTVSQSAQSVSASNADPALVEASKKEADGI CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCCE LIYSIMSEKNWQPVIQGFNAKYPWIKVTTADLGAYEVFERYYTEAAGNARTADFISTTAP EEEEECCCCCCHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHCCCC DGWINFIDKGEVQSYVSSEDAQIPELGKIAQGVYAASTDPMVFIWNKQLVADPPQTMAEL CHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHCCEECCCCCEEEEECCCCCCCCHHHHHHH ISMIEKDPSAMQDKLVSYDADGEGFGYGLNWFYTKAKGADGWKTLEAIGSSQPKILTSGG HHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEECCH KMIDSVLSGESSIGYFVSNITVQPRLEAAQQLLGYSFVPDAQVVAVRGMAVTKHAASPNS HHHHHHHCCCCCCCEEEECCEECCHHHHHHHHHCCCCCCCCEEEEEECEEEECCCCCCCH AKLLLDYILSAEGQMAFSQGGLTAYRPDIAASAPLHLSQVSQAVGGEQNIIFSRPDKALA HHHHHHHHHCCCCCEEECCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCHHHC DPQQRSQFLNQWKQALGRNQ CHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKSHFTRIVAHVFTVGLMASLISCGSTQVTPTVSQSAQSVSASNADPALVEASKKEADGI CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCCE LIYSIMSEKNWQPVIQGFNAKYPWIKVTTADLGAYEVFERYYTEAAGNARTADFISTTAP EEEEECCCCCCHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHCCCC DGWINFIDKGEVQSYVSSEDAQIPELGKIAQGVYAASTDPMVFIWNKQLVADPPQTMAEL CHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHCCEECCCCCEEEEECCCCCCCCHHHHHHH ISMIEKDPSAMQDKLVSYDADGEGFGYGLNWFYTKAKGADGWKTLEAIGSSQPKILTSGG HHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEECCH KMIDSVLSGESSIGYFVSNITVQPRLEAAQQLLGYSFVPDAQVVAVRGMAVTKHAASPNS HHHHHHHCCCCCCCEEEECCEECCHHHHHHHHHCCCCCCCCEEEEEECEEEECCCCCCCH AKLLLDYILSAEGQMAFSQGGLTAYRPDIAASAPLHLSQVSQAVGGEQNIIFSRPDKALA HHHHHHHHHCCCCCEEECCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCHHHC DPQQRSQFLNQWKQALGRNQ CHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA