Click here to switch to the map view.

The map label for this gene is ythA [H]

Identifier: 159898764

GI number: 159898764

Start: 2859799

End: 2861124

Strand: Direct

Name: ythA [H]

Synonym: Haur_2243

Alternate gene names: 159898764

Gene position: 2859799-2861124 (Clockwise)

Preceding gene: 159898763

Following gene: 159898765

Centisome position: 45.06

GC content: 53.02

Gene sequence:

>1326_bases
ATGGATACCTTGACCGCAGCACGGGCGCAGATGGAGGTCTCGCTCGCGTTTCACATGGTTTTTGCGGCGTTGGGCATTGG
CTTTCCCTTGCTCATGGTCATCAGCGAGGGCTTGGGCTTGAAAACGGGGCAAGCTCATTATCTCGCACTGGCAAAGAAAT
GGGCTAAAGCGACGGCGCTTACCTTTGCAATTGGCGCTGTTTCAGGCACCGCGCTAGCATTCGAGCTAGGGTTGCTTTGG
CCGACCTTTATGGGCTTTGCAGGCAGTATCATTGGCTCGGCCTTCACGCTCGAGGGCTTTGCCTTTTTTATCGAAGCGAT
TTTCCTTGGCTTGTATCTTTATGGTTGGAAGCGGCTCTCGCCACTAGCTCACTGGCTCACTGGCATTCCAGTCGCAATCA
GTGGGATGCTTTCAGGCGCATTGGTGGTGGCGGCCAATGCGTGGATGCAAACACCAGTTGGCTTCGATTTAGTTGATGGC
AAGGCGGTGAATGTTAATCCGCTGGCCCCGTTTCTCTCGCCTGCTTGGCTCGATATGGCTTTACACTCAACCCTGTCGTG
CTATATCGCAACTGGTTTTGCCGTGGCTGGCGTATATGCGATGGGCTTGCTCAAAGGCCGTAACGACCACTATCATCGCT
CAGCCTTGACAATTAGCTTGGGCTTGGCGACCGTCACCGCCTTGTTGCAGCCAATTAGCGGCCATATCAGTGCCCAACGC
GTTGCCAAAGATCAGCCTGCCAAACTAGCAGCGATGGAAGCCTTATTTGAAACCCAAGCTGGCGCACCGTTGTTGATCGG
CGGAATTCCCGACCCTGAAACTGGCGAGATTCACTTTGGAATCGAAATTCCTAAGGCGCTGAGTTTTATGGCAACCAACG
ATTTTAACGCCGAATTACGGGGGCTAAATAGCTTTCCACCTGACGAACGCCCAAATGTGGTGATCACCCATATTGCCTTT
CAGGTGATGGTTGGAGCTGGCTTTGCCTTGATTGGCTTAGGCTTGTGGTTTTGGTGGCGGCGTTGGCGTGGCAATCTTGC
TCTGAGTCGCAAACTATTATGGGCCTTGGTTTTTGGCTCGCCATTGGGTTTTATCGCCTTACAAGCGGGCTGGATTGTGA
CCGAGGTTGGCCGCCAGCCGTGGATCATTTATGGAGTGATGCGGACTCGCGATGCGGTAACTACGGTCGCTGGTGTGCCG
CAGGTGTTTTATCTGTTTAGCTTGCTCTATATTGGCCTTGCAAGTGTACTCGTGTATTTATTACGTCAACTTGCTACGGG
CTATCCTGCCGAAACTAGCGAAAGTGAGGCAACCCATGCCGCTTGA

Upstream 100 bases:

>100_bases
GACCTGAGAATGGTTCCAATCAAGGCCCGATGGTTGATGAGACAATTCTCGGTACGCTTATGGCTAGGGGGTTCTCCAAA
CTTTTTGCGGAGGAATACAA

Downstream 100 bases:

>100_bases
GGTTGTTGTCGCCGCAATTGGCTTGCTAGGGGTCATTACCTATGCGATTTTGGCAGGCGCTGATTTTGGCGGTGGGATCT
GGGATTTATTGGCGTGGGGG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MDTLTAARAQMEVSLAFHMVFAALGIGFPLLMVISEGLGLKTGQAHYLALAKKWAKATALTFAIGAVSGTALAFELGLLW
PTFMGFAGSIIGSAFTLEGFAFFIEAIFLGLYLYGWKRLSPLAHWLTGIPVAISGMLSGALVVAANAWMQTPVGFDLVDG
KAVNVNPLAPFLSPAWLDMALHSTLSCYIATGFAVAGVYAMGLLKGRNDHYHRSALTISLGLATVTALLQPISGHISAQR
VAKDQPAKLAAMEALFETQAGAPLLIGGIPDPETGEIHFGIEIPKALSFMATNDFNAELRGLNSFPPDERPNVVITHIAF
QVMVGAGFALIGLGLWFWWRRWRGNLALSRKLLWALVFGSPLGFIALQAGWIVTEVGRQPWIIYGVMRTRDAVTTVAGVP
QVFYLFSLLYIGLASVLVYLLRQLATGYPAETSESEATHAA

Sequences:

>Translated_441_residues
MDTLTAARAQMEVSLAFHMVFAALGIGFPLLMVISEGLGLKTGQAHYLALAKKWAKATALTFAIGAVSGTALAFELGLLW
PTFMGFAGSIIGSAFTLEGFAFFIEAIFLGLYLYGWKRLSPLAHWLTGIPVAISGMLSGALVVAANAWMQTPVGFDLVDG
KAVNVNPLAPFLSPAWLDMALHSTLSCYIATGFAVAGVYAMGLLKGRNDHYHRSALTISLGLATVTALLQPISGHISAQR
VAKDQPAKLAAMEALFETQAGAPLLIGGIPDPETGEIHFGIEIPKALSFMATNDFNAELRGLNSFPPDERPNVVITHIAF
QVMVGAGFALIGLGLWFWWRRWRGNLALSRKLLWALVFGSPLGFIALQAGWIVTEVGRQPWIIYGVMRTRDAVTTVAGVP
QVFYLFSLLYIGLASVLVYLLRQLATGYPAETSESEATHAA
>Mature_441_residues
MDTLTAARAQMEVSLAFHMVFAALGIGFPLLMVISEGLGLKTGQAHYLALAKKWAKATALTFAIGAVSGTALAFELGLLW
PTFMGFAGSIIGSAFTLEGFAFFIEAIFLGLYLYGWKRLSPLAHWLTGIPVAISGMLSGALVVAANAWMQTPVGFDLVDG
KAVNVNPLAPFLSPAWLDMALHSTLSCYIATGFAVAGVYAMGLLKGRNDHYHRSALTISLGLATVTALLQPISGHISAQR
VAKDQPAKLAAMEALFETQAGAPLLIGGIPDPETGEIHFGIEIPKALSFMATNDFNAELRGLNSFPPDERPNVVITHIAF
QVMVGAGFALIGLGLWFWWRRWRGNLALSRKLLWALVFGSPLGFIALQAGWIVTEVGRQPWIIYGVMRTRDAVTTVAGVP
QVFYLFSLLYIGLASVLVYLLRQLATGYPAETSESEATHAA

Specific function: Probable cytochrome [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=312, Percent_Identity=31.0897435897436, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1787212, Length=327, Percent_Identity=28.1345565749235, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 47301; Mature: 47301

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLTAARAQMEVSLAFHMVFAALGIGFPLLMVISEGLGLKTGQAHYLALAKKWAKATAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
TFAIGAVSGTALAFELGLLWPTFMGFAGSIIGSAFTLEGFAFFIEAIFLGLYLYGWKRLS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAHWLTGIPVAISGMLSGALVVAANAWMQTPVGFDLVDGKAVNVNPLAPFLSPAWLDMA
HHHHHHCCCHHHHHHHHHHHHHEEEHHHHCCCCCCEEECCEEECCCCCCHHCCHHHHHHH
LHSTLSCYIATGFAVAGVYAMGLLKGRNDHYHRSALTISLGLATVTALLQPISGHISAQR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEHHHHHHHHHHHHHHCCHHHHH
VAKDQPAKLAAMEALFETQAGAPLLIGGIPDPETGEIHFGIEIPKALSFMATNDFNAELR
HHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEECHHHHHHHHCCCCCHHHC
GLNSFPPDERPNVVITHIAFQVMVGAGFALIGLGLWFWWRRWRGNLALSRKLLWALVFGS
CCCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PLGFIALQAGWIVTEVGRQPWIIYGVMRTRDAVTTVAGVPQVFYLFSLLYIGLASVLVYL
CHHHHHHHCCCCEECCCCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LRQLATGYPAETSESEATHAA
HHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDTLTAARAQMEVSLAFHMVFAALGIGFPLLMVISEGLGLKTGQAHYLALAKKWAKATAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
TFAIGAVSGTALAFELGLLWPTFMGFAGSIIGSAFTLEGFAFFIEAIFLGLYLYGWKRLS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAHWLTGIPVAISGMLSGALVVAANAWMQTPVGFDLVDGKAVNVNPLAPFLSPAWLDMA
HHHHHHCCCHHHHHHHHHHHHHEEEHHHHCCCCCCEEECCEEECCCCCCHHCCHHHHHHH
LHSTLSCYIATGFAVAGVYAMGLLKGRNDHYHRSALTISLGLATVTALLQPISGHISAQR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEHHHHHHHHHHHHHHCCHHHHH
VAKDQPAKLAAMEALFETQAGAPLLIGGIPDPETGEIHFGIEIPKALSFMATNDFNAELR
HHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEECHHHHHHHHCCCCCHHHC
GLNSFPPDERPNVVITHIAFQVMVGAGFALIGLGLWFWWRRWRGNLALSRKLLWALVFGS
CCCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PLGFIALQAGWIVTEVGRQPWIIYGVMRTRDAVTTVAGVPQVFYLFSLLYIGLASVLVYL
CHHHHHHHCCCCEECCCCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LRQLATGYPAETSESEATHAA
HHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]