| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898737
Identifier: 159898737
GI number: 159898737
Start: 2815708
End: 2816571
Strand: Direct
Name: 159898737
Synonym: Haur_2216
Alternate gene names: NA
Gene position: 2815708-2816571 (Clockwise)
Preceding gene: 159898736
Following gene: 159898738
Centisome position: 44.37
GC content: 49.19
Gene sequence:
>864_bases ATGAAACCACGCTTAGCTACATGGTTGATAGCACTCGGCTGGTTATTAATAGGATGTGGAGCACAAACTCCACCTGGTTC AGATCAAACAGCTCCAACACCAAGCCGCCCAATACTTGGCTTGATCACACCATCGCTTGCCCAAACTGTATCAATCCAAA CTCCAGTAGCAACTCAACAGCCAACACCAGCTATAACAGCAGTTGCCTGCCAAAAACCGAGCACATGGATCAGCTACACC GTTTTGCTCAATGATACGCTTTCCGAGCTAGCCTACCGCAGCGGAACGAGCGTCGAACAGCTTCAACAGGTCAATTGTTT AAATGACACGCTCATTTTCGCAGGCCAACAGCTCTACTTGCCCACGCTGTCAAGCGTTGAGCCAACCAATGATGTAGCTG CTCCAGCCGAACCAAGCAGCGAGCCATCACCTAATCCCGATCTGGCAGCAATCGCCACGCGCACGATTGATATTCCGATT CCAAGTGGGCCAAACGATCAGCTTTTGATTAGCCCCAGCCTTGGTATTGCTGGCACAAGCTTCAGCTTGCACTATCAGAA ATTCGAACCCAATGCGAATATCAATTACACCATCTACAACGAAGATTTTGCGATCGTGGCAACAGGTGAGCTGATGGCTG ATGCTACGGGGAAAATCACCTTTGTCTATGTTAGCCCCGTCGATACTCCAAGTGGCTTTTATCTGGTTGAAATGCAAAGC CAAACTGTGTGGGCCGAAGCAAGCTTTGAAATTATTGAATCATCGACCTTACCCAAAGCATCGCCTGAACCAACCAGCAC CAAAGCCAGCCCAAGCCCAAGCACCACGCCAATTGATATAACACTCACGCCCAACGACGAATAA
Upstream 100 bases:
>100_bases CCAACGCTGCTCAGTGGTCATTTGAGCAAGCCCAACGTTTAGCCACAAATGCCGATTTGCAGCAGCGCGTCCAACAACGG CTCACCCAAGGAGCAGCCAA
Downstream 100 bases:
>100_bases ATTTACACCCATAATTCACACCAAATGAGGTCAATGATGCTTTTTCCACCGACCAATCAGCATGGGCCGCTAGCCCGCTG TATTGTGGTCAAATTCCACG
Product: peptidoglycan-binding LysM
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MKPRLATWLIALGWLLIGCGAQTPPGSDQTAPTPSRPILGLITPSLAQTVSIQTPVATQQPTPAITAVACQKPSTWISYT VLLNDTLSELAYRSGTSVEQLQQVNCLNDTLIFAGQQLYLPTLSSVEPTNDVAAPAEPSSEPSPNPDLAAIATRTIDIPI PSGPNDQLLISPSLGIAGTSFSLHYQKFEPNANINYTIYNEDFAIVATGELMADATGKITFVYVSPVDTPSGFYLVEMQS QTVWAEASFEIIESSTLPKASPEPTSTKASPSPSTTPIDITLTPNDE
Sequences:
>Translated_287_residues MKPRLATWLIALGWLLIGCGAQTPPGSDQTAPTPSRPILGLITPSLAQTVSIQTPVATQQPTPAITAVACQKPSTWISYT VLLNDTLSELAYRSGTSVEQLQQVNCLNDTLIFAGQQLYLPTLSSVEPTNDVAAPAEPSSEPSPNPDLAAIATRTIDIPI PSGPNDQLLISPSLGIAGTSFSLHYQKFEPNANINYTIYNEDFAIVATGELMADATGKITFVYVSPVDTPSGFYLVEMQS QTVWAEASFEIIESSTLPKASPEPTSTKASPSPSTTPIDITLTPNDE >Mature_287_residues MKPRLATWLIALGWLLIGCGAQTPPGSDQTAPTPSRPILGLITPSLAQTVSIQTPVATQQPTPAITAVACQKPSTWISYT VLLNDTLSELAYRSGTSVEQLQQVNCLNDTLIFAGQQLYLPTLSSVEPTNDVAAPAEPSSEPSPNPDLAAIATRTIDIPI PSGPNDQLLISPSLGIAGTSFSLHYQKFEPNANINYTIYNEDFAIVATGELMADATGKITFVYVSPVDTPSGFYLVEMQS QTVWAEASFEIIESSTLPKASPEPTSTKASPSPSTTPIDITLTPNDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30477; Mature: 30477
Theoretical pI: Translated: 3.89; Mature: 3.89
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPRLATWLIALGWLLIGCGAQTPPGSDQTAPTPSRPILGLITPSLAQTVSIQTPVATQQ CCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHEEEEECCCCCCC PTPAITAVACQKPSTWISYTVLLNDTLSELAYRSGTSVEQLQQVNCLNDTLIFAGQQLYL CCCCEEEEEECCCCCEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCEEEC PTLSSVEPTNDVAAPAEPSSEPSPNPDLAAIATRTIDIPIPSGPNDQLLISPSLGIAGTS CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEECCCCEEECE FSLHYQKFEPNANINYTIYNEDFAIVATGELMADATGKITFVYVSPVDTPSGFYLVEMQS EEEEEEEECCCCCEEEEEECCCEEEEEECCEEECCCCCEEEEEEECCCCCCCEEEEEECC QTVWAEASFEIIESSTLPKASPEPTSTKASPSPSTTPIDITLTPNDE CEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC >Mature Secondary Structure MKPRLATWLIALGWLLIGCGAQTPPGSDQTAPTPSRPILGLITPSLAQTVSIQTPVATQQ CCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHEEEEECCCCCCC PTPAITAVACQKPSTWISYTVLLNDTLSELAYRSGTSVEQLQQVNCLNDTLIFAGQQLYL CCCCEEEEEECCCCCEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCEEEC PTLSSVEPTNDVAAPAEPSSEPSPNPDLAAIATRTIDIPIPSGPNDQLLISPSLGIAGTS CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEECCCCEEECE FSLHYQKFEPNANINYTIYNEDFAIVATGELMADATGKITFVYVSPVDTPSGFYLVEMQS EEEEEEEECCCCCEEEEEECCCEEEEEECCEEECCCCCEEEEEEECCCCCCCEEEEEECC QTVWAEASFEIIESSTLPKASPEPTSTKASPSPSTTPIDITLTPNDE CEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA