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The map label for this gene is lyc [H]

Identifier: 159898672

GI number: 159898672

Start: 2709410

End: 2710330

Strand: Reverse

Name: lyc [H]

Synonym: Haur_2151

Alternate gene names: 159898672

Gene position: 2710330-2709410 (Counterclockwise)

Preceding gene: 159898673

Following gene: 159898671

Centisome position: 42.71

GC content: 49.4

Gene sequence:

>921_bases
ATGAAAGCTTTAGTTTGGCGAATTGCCAGTTTTACCTTGATTTTTGGAATTACACTTGGTTCAATTGGCTCGGCGCAGGC
ATTTTCAGCGGCATTTTTCCATACCATTAGCAAAGGCAATCGTGGCACTGATGTCAAAGCTATGCAATATTTGCTCAATA
TTAGTGCCGATGGTGTGTTTGGCTCAGGCACCGAAAGCTCAGTCAAGAGTTTTCAATCAAGCCGAGGCCTTGGGGCTGAT
GGCATTGTCGGCCCTAACACTTGGAATGCCTTGATTGTAACCGTGCGCCGTGGCGATAATGGTAACGCGGTCAAGGCTGT
TCAAACCTTGTTGAATGCCAAACGCAACGCTGGCCTAACCGTCGATGGGGCATTTGGGGCTGGTACTGAGAGCGCTGTCA
AGAGTTTTCAGAGCCATGCTGGCCTGAGTGCCGATGGCGTGGTTGGCCCAACCACTTGGAAGAACTTAATTTGGCATTAT
GAATATACCGATTTCAGTGCCAACATCTGCGATCAAGACCCCGATGGCAATGGCAACGCTAACTGGGGTGTCGCCTCAAC
CGTGGCCCAAATTGAAGCAGCCGCTAGTGATTTTGCTGGTTATGGCAAGGGTAAAGTGCCGCTTGGCGATATTAGTTTTG
AGCATGGCGGCGATATCCCAGGCCATGCCTCGCACGAAACTGGCCTTGATGTTGATCTTTGGCCAATTCGCACTGATAGC
AAGCAATGCACGGGCAGCCGAATCACGTGGCAATCGAGCACCTACGATCGCGCTGCTACCCGTAATTTGGTCAAAGCCAT
TCGAGCTGCGGCCCCCAACCAAATTACCGTGATCTACTTCAATGATCCAGTGTTGATTAGCGAAGGTTTGACGACTTCCT
ATCCCAATCACGATAATCATTTACACATTCGCTTTAAATAA

Upstream 100 bases:

>100_bases
TACCCTTGTTCGCGCCTTCCAAACCAATCGCCAACTGACGGTTGATGGCGTGGTCGGCTTGAACAGCTGGAACAACTTAG
CGATGTAGTGAGGTTGCTTG

Downstream 100 bases:

>100_bases
AGATTGATTGTTGTGCGATAATCCGTCAGGCCTGCTGCTGTGAAGTGGCTAGCCTGACGGATTCTGGCTATTTAAGAGGA
ATGTTGCCCCATGCGTTGGA

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: 1,4-beta-N-acetylmuramidase; Autolysin [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKALVWRIASFTLIFGITLGSIGSAQAFSAAFFHTISKGNRGTDVKAMQYLLNISADGVFGSGTESSVKSFQSSRGLGAD
GIVGPNTWNALIVTVRRGDNGNAVKAVQTLLNAKRNAGLTVDGAFGAGTESAVKSFQSHAGLSADGVVGPTTWKNLIWHY
EYTDFSANICDQDPDGNGNANWGVASTVAQIEAAASDFAGYGKGKVPLGDISFEHGGDIPGHASHETGLDVDLWPIRTDS
KQCTGSRITWQSSTYDRAATRNLVKAIRAAAPNQITVIYFNDPVLISEGLTTSYPNHDNHLHIRFK

Sequences:

>Translated_306_residues
MKALVWRIASFTLIFGITLGSIGSAQAFSAAFFHTISKGNRGTDVKAMQYLLNISADGVFGSGTESSVKSFQSSRGLGAD
GIVGPNTWNALIVTVRRGDNGNAVKAVQTLLNAKRNAGLTVDGAFGAGTESAVKSFQSHAGLSADGVVGPTTWKNLIWHY
EYTDFSANICDQDPDGNGNANWGVASTVAQIEAAASDFAGYGKGKVPLGDISFEHGGDIPGHASHETGLDVDLWPIRTDS
KQCTGSRITWQSSTYDRAATRNLVKAIRAAAPNQITVIYFNDPVLISEGLTTSYPNHDNHLHIRFK
>Mature_306_residues
MKALVWRIASFTLIFGITLGSIGSAQAFSAAFFHTISKGNRGTDVKAMQYLLNISADGVFGSGTESSVKSFQSSRGLGAD
GIVGPNTWNALIVTVRRGDNGNAVKAVQTLLNAKRNAGLTVDGAFGAGTESAVKSFQSHAGLSADGVVGPTTWKNLIWHY
EYTDFSANICDQDPDGNGNANWGVASTVAQIEAAASDFAGYGKGKVPLGDISFEHGGDIPGHASHETGLDVDLWPIRTDS
KQCTGSRITWQSSTYDRAATRNLVKAIRAAAPNQITVIYFNDPVLISEGLTTSYPNHDNHLHIRFK

Specific function: Unknown

COG id: COG3409

COG function: function code M; Putative peptidoglycan-binding domain-containing protein

Gene ontology:

Cell location: Secreted. Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 25 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002053
- InterPro:   IPR008270
- InterPro:   IPR017853
- InterPro:   IPR018077
- InterPro:   IPR013781
- InterPro:   IPR002477 [H]

Pfam domain/function: PF01183 Glyco_hydro_25; PF01471 PG_binding_1 [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 32496; Mature: 32496

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALVWRIASFTLIFGITLGSIGSAQAFSAAFFHTISKGNRGTDVKAMQYLLNISADGVF
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
GSGTESSVKSFQSSRGLGADGIVGPNTWNALIVTVRRGDNGNAVKAVQTLLNAKRNAGLT
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEE
VDGAFGAGTESAVKSFQSHAGLSADGVVGPTTWKNLIWHYEYTDFSANICDQDPDGNGNA
EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCCC
NWGVASTVAQIEAAASDFAGYGKGKVPLGDISFEHGGDIPGHASHETGLDVDLWPIRTDS
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
KQCTGSRITWQSSTYDRAATRNLVKAIRAAAPNQITVIYFNDPVLISEGLTTSYPNHDNH
CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCCCE
LHIRFK
EEEEEC
>Mature Secondary Structure
MKALVWRIASFTLIFGITLGSIGSAQAFSAAFFHTISKGNRGTDVKAMQYLLNISADGVF
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
GSGTESSVKSFQSSRGLGADGIVGPNTWNALIVTVRRGDNGNAVKAVQTLLNAKRNAGLT
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEE
VDGAFGAGTESAVKSFQSHAGLSADGVVGPTTWKNLIWHYEYTDFSANICDQDPDGNGNA
EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCCC
NWGVASTVAQIEAAASDFAGYGKGKVPLGDISFEHGGDIPGHASHETGLDVDLWPIRTDS
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
KQCTGSRITWQSSTYDRAATRNLVKAIRAAAPNQITVIYFNDPVLISEGLTTSYPNHDNH
CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCCCE
LHIRFK
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916274; 11466286; 1599233; 1645127 [H]