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The map label for this gene is yvrB [H]

Identifier: 159898621

GI number: 159898621

Start: 2624680

End: 2625684

Strand: Reverse

Name: yvrB [H]

Synonym: Haur_2100

Alternate gene names: 159898621

Gene position: 2625684-2624680 (Counterclockwise)

Preceding gene: 159898622

Following gene: 159898620

Centisome position: 41.37

GC content: 54.03

Gene sequence:

>1005_bases
GTGGTACTCACGCTCATGTTGATTGGGGTCATTTTGCTTGGTGTTGCTATTGGCTCGGTTTCAGTGCCCGTGCCGATCGT
TGCCAAGATTATTCTCAACCACCTGATGCCGAACACAGTTTCCGTGACATGGACTCCCACGCAAGACCAGATTGTGTGGC
AATTTCGCCTGCCGCGGGTGTTATTAGCCGTCATTGTTGGTGCGGCACTATCAGTCAGTGGGACAGCCCTCCAAGCCATG
GTGCGAAATCCTCTTGCCGATCCGTATCTGTTTGGTGTTTCCTCGGGCGCATCCGTGGCAGCGGTTGCAGTGCTCACCCT
TGGTACTGCTGCTATTGGCGGATTATCCCTGTCGTTCGCGGCATTCGGTGGGGCCATGCTGACCATGGTTGTGGTCTATG
CCTTGGCACAGCAATCGGGTCGTGTTATCCCAACACGCCTGGTTTTGGCAGGGGTGTCGTTGGGCTATGTGCTCTCAGCG
ATGACCAGCTATCTCGTGTTGCGCTCAACTACGCCCTATGGTGGTGCCGCAGCGGTATTAACCTGGTTGGCCGGAAATTT
GGGCGGCGCAAAGTGGCAGTATCTTGGTCTTCCCAGCCTTGCGGTGTTGGGCTCGACAGGACTTTTAATGCTGCAATTTC
GTTCACTGAATGCGGTCTTAGCTGGCGACGAAACGGCCATCAGTCTAGGGGTGAATCTTCATCGGTTTCGGATACAGCTG
TTTGTGCTGAGTTCGTTGATGGTGGGAACAGTCGTTGCCATGAGTGGAGCGATTGGATTTGTCGGCTTGATGATACCGCA
TATTGTCCGCCTGTTGGTTGGCGTGGATCATCGCTATGTCTTGCCAACCAGTGCCTTGTTGGGAGGGGTGTATATGGTGC
TGGTTGATTTGATTGGGCGAATCGTGATCGCACCCCAAGAACTGCCCGTTGGTATTGTGACTGCCATGATTGGAGGACCC
TTTTTTATCTGGCTTATGCGACAGCGTTCGGGAGGTGTCGGATGA

Upstream 100 bases:

>100_bases
CGCTGCACCCAGAGGTATTCGAGTGATCGTGCGTCATTCCCATGACCCACAATCGTCACCGCGCGTACCACCAGCAATTC
CCGCCATTGGGGGGTTGCTG

Downstream 100 bases:

>100_bases
AGCTCACAATTCACCACGTCGCCGTCTCGGTGAGCAGTCGTCAGATTGTCTCCAATATTGATTTAGCTGTTCAGCCTGGT
GAAATTGTGGGTTTGGTTGG

Product: transport system permease

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MVLTLMLIGVILLGVAIGSVSVPVPIVAKIILNHLMPNTVSVTWTPTQDQIVWQFRLPRVLLAVIVGAALSVSGTALQAM
VRNPLADPYLFGVSSGASVAAVAVLTLGTAAIGGLSLSFAAFGGAMLTMVVVYALAQQSGRVIPTRLVLAGVSLGYVLSA
MTSYLVLRSTTPYGGAAAVLTWLAGNLGGAKWQYLGLPSLAVLGSTGLLMLQFRSLNAVLAGDETAISLGVNLHRFRIQL
FVLSSLMVGTVVAMSGAIGFVGLMIPHIVRLLVGVDHRYVLPTSALLGGVYMVLVDLIGRIVIAPQELPVGIVTAMIGGP
FFIWLMRQRSGGVG

Sequences:

>Translated_334_residues
MVLTLMLIGVILLGVAIGSVSVPVPIVAKIILNHLMPNTVSVTWTPTQDQIVWQFRLPRVLLAVIVGAALSVSGTALQAM
VRNPLADPYLFGVSSGASVAAVAVLTLGTAAIGGLSLSFAAFGGAMLTMVVVYALAQQSGRVIPTRLVLAGVSLGYVLSA
MTSYLVLRSTTPYGGAAAVLTWLAGNLGGAKWQYLGLPSLAVLGSTGLLMLQFRSLNAVLAGDETAISLGVNLHRFRIQL
FVLSSLMVGTVVAMSGAIGFVGLMIPHIVRLLVGVDHRYVLPTSALLGGVYMVLVDLIGRIVIAPQELPVGIVTAMIGGP
FFIWLMRQRSGGVG
>Mature_334_residues
MVLTLMLIGVILLGVAIGSVSVPVPIVAKIILNHLMPNTVSVTWTPTQDQIVWQFRLPRVLLAVIVGAALSVSGTALQAM
VRNPLADPYLFGVSSGASVAAVAVLTLGTAAIGGLSLSFAAFGGAMLTMVVVYALAQQSGRVIPTRLVLAGVSLGYVLSA
MTSYLVLRSTTPYGGAAAVLTWLAGNLGGAKWQYLGLPSLAVLGSTGLLMLQFRSLNAVLAGDETAISLGVNLHRFRIQL
FVLSSLMVGTVVAMSGAIGFVGLMIPHIVRLLVGVDHRYVLPTSALLGGVYMVLVDLIGRIVIAPQELPVGIVTAMIGGP
FFIWLMRQRSGGVG

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790741, Length=288, Percent_Identity=38.8888888888889, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1788004, Length=282, Percent_Identity=39.7163120567376, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1790740, Length=330, Percent_Identity=35.7575757575758, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1786805, Length=322, Percent_Identity=36.6459627329193, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1786347, Length=294, Percent_Identity=32.312925170068, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786804, Length=284, Percent_Identity=33.0985915492958, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 34696; Mature: 34696

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLTLMLIGVILLGVAIGSVSVPVPIVAKIILNHLMPNTVSVTWTPTQDQIVWQFRLPRV
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEHHHHH
LLAVIVGAALSVSGTALQAMVRNPLADPYLFGVSSGASVAAVAVLTLGTAAIGGLSLSFA
HHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHH
AFGGAMLTMVVVYALAQQSGRVIPTRLVLAGVSLGYVLSAMTSYLVLRSTTPYGGAAAVL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH
TWLAGNLGGAKWQYLGLPSLAVLGSTGLLMLQFRSLNAVLAGDETAISLGVNLHRFRIQL
HHHHCCCCCCCEEEECCCHHHHHCCCCEEEEEEECCCEEEECCCEEEEECCCHHHHHHHH
FVLSSLMVGTVVAMSGAIGFVGLMIPHIVRLLVGVDHRYVLPTSALLGGVYMVLVDLIGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHH
IVIAPQELPVGIVTAMIGGPFFIWLMRQRSGGVG
EEECCCCCCHHHHHHHHCCHHEEEEEECCCCCCC
>Mature Secondary Structure
MVLTLMLIGVILLGVAIGSVSVPVPIVAKIILNHLMPNTVSVTWTPTQDQIVWQFRLPRV
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEHHHHH
LLAVIVGAALSVSGTALQAMVRNPLADPYLFGVSSGASVAAVAVLTLGTAAIGGLSLSFA
HHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHH
AFGGAMLTMVVVYALAQQSGRVIPTRLVLAGVSLGYVLSAMTSYLVLRSTTPYGGAAAVL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH
TWLAGNLGGAKWQYLGLPSLAVLGSTGLLMLQFRSLNAVLAGDETAISLGVNLHRFRIQL
HHHHCCCCCCCEEEECCCHHHHHCCCCEEEEEEECCCEEEECCCEEEEECCCHHHHHHHH
FVLSSLMVGTVVAMSGAIGFVGLMIPHIVRLLVGVDHRYVLPTSALLGGVYMVLVDLIGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHH
IVIAPQELPVGIVTAMIGGPFFIWLMRQRSGGVG
EEECCCCCCHHHHHHHHCCHHEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]