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The map label for this gene is tnpR [H]

Identifier: 159898557

GI number: 159898557

Start: 2529745

End: 2530323

Strand: Direct

Name: tnpR [H]

Synonym: Haur_2033

Alternate gene names: 159898557

Gene position: 2529745-2530323 (Clockwise)

Preceding gene: 159898556

Following gene: 159898558

Centisome position: 39.86

GC content: 57.51

Gene sequence:

>579_bases
ATGGCGGGACAACGGGTGGGCTATATTCGCATCAGTACCAGCGATCAGCATCCGGATCGACAGCTCGACGGCCAGACCCT
TGATCGCGTCTTTACCGAGCACGCTTCGGGTAAGGATCGTAACCGACCGCAGCTAGCGGCCTTATGCGCATTTGTGCGGA
CTGGCGATACGGTGGTTGTCCATAGTATGGATCGCTTGGCTCGCAATCTTGATGATCTCCGTGAGATTGTGCAGACCCTG
ACCCAACGCGGCGTGGCGATTCACTTTGTCACCAAGCACTTGACGTTTACGGGGAATGATTCCCCGATGGCGACGCTCAT
TCTCTCCATGCTTGGAGCGGTGGCTGAATTTGAACGGGCCTTGATCCGCGAACGCCAGCGCGAAGGGATCGCCATGGCCA
AGCAGCGTGGCGTGTATAAAGGTCGGAAGAAGGTGCTGAATCCTGCGACCATCGCTCAGGTCGTCGATCGAGCCGCTGCC
GGGGAATCCAAAACGGCCTTAGCCCGCGAGCTGGGCATTAGCCGTGAAACGCTCTATCAGTATCTGCGTCAGCATGCGAC
GGCTGACCGAACTCATTAA

Upstream 100 bases:

>100_bases
ACAATCCAGTGTCAGAGTAGGGTTATTTTTGCCATTTCTTGACGAATGCTCACAATGGTCTTAAACTCTATCCTGACAGT
ACATCCGCGAGGAGACCATC

Downstream 100 bases:

>100_bases
GGAACGGAGGATGGAATGAGCCTAGTTGCGATTCTTGAACAAGTCCAAACCTTGAGCATCCAAGAACGGAAAGATCTGGT
GAAATTCTTGGTCGATTCCT

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MAGQRVGYIRISTSDQHPDRQLDGQTLDRVFTEHASGKDRNRPQLAALCAFVRTGDTVVVHSMDRLARNLDDLREIVQTL
TQRGVAIHFVTKHLTFTGNDSPMATLILSMLGAVAEFERALIRERQREGIAMAKQRGVYKGRKKVLNPATIAQVVDRAAA
GESKTALARELGISRETLYQYLRQHATADRTH

Sequences:

>Translated_192_residues
MAGQRVGYIRISTSDQHPDRQLDGQTLDRVFTEHASGKDRNRPQLAALCAFVRTGDTVVVHSMDRLARNLDDLREIVQTL
TQRGVAIHFVTKHLTFTGNDSPMATLILSMLGAVAEFERALIRERQREGIAMAKQRGVYKGRKKVLNPATIAQVVDRAAA
GESKTALARELGISRETLYQYLRQHATADRTH
>Mature_191_residues
AGQRVGYIRISTSDQHPDRQLDGQTLDRVFTEHASGKDRNRPQLAALCAFVRTGDTVVVHSMDRLARNLDDLREIVQTLT
QRGVAIHFVTKHLTFTGNDSPMATLILSMLGAVAEFERALIRERQREGIAMAKQRGVYKGRKKVLNPATIAQVVDRAAAG
ESKTALARELGISRETLYQYLRQHATADRTH

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=180, Percent_Identity=35, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1787827, Length=197, Percent_Identity=34.5177664974619, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1787638, Length=193, Percent_Identity=34.7150259067358, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 21448; Mature: 21317

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGQRVGYIRISTSDQHPDRQLDGQTLDRVFTEHASGKDRNRPQLAALCAFVRTGDTVVV
CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEE
HSMDRLARNLDDLREIVQTLTQRGVAIHFVTKHLTFTGNDSPMATLILSMLGAVAEFERA
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHEEECCCCCHHHHHHHHHHHHHHHHHHH
LIRERQREGIAMAKQRGVYKGRKKVLNPATIAQVVDRAAAGESKTALARELGISRETLYQ
HHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH
YLRQHATADRTH
HHHHHHCCCCCC
>Mature Secondary Structure 
AGQRVGYIRISTSDQHPDRQLDGQTLDRVFTEHASGKDRNRPQLAALCAFVRTGDTVVV
CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEE
HSMDRLARNLDDLREIVQTLTQRGVAIHFVTKHLTFTGNDSPMATLILSMLGAVAEFERA
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHEEECCCCCHHHHHHHHHHHHHHHHHHH
LIRERQREGIAMAKQRGVYKGRKKVLNPATIAQVVDRAAAGESKTALARELGISRETLYQ
HHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH
YLRQHATADRTH
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2992807; 6312271; 3029727 [H]