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The map label for this gene is yddE [C]

Identifier: 159898556

GI number: 159898556

Start: 2528551

End: 2529453

Strand: Direct

Name: yddE [C]

Synonym: Haur_2032

Alternate gene names: 159898556

Gene position: 2528551-2529453 (Clockwise)

Preceding gene: 159898543

Following gene: 159898557

Centisome position: 39.84

GC content: 46.62

Gene sequence:

>903_bases
ATGAAACAGGTTAACGTGTATCAAGTTGATGCCTTCACTCAGCATAAATTTCGCGGAAATCCTGCTGGGGTTGTGACACA
TGCTGATGATCTGAGCACCCACGAGATGCAACAACTGGCCCGCGAACTGAATAACTCCGAAACGGTCTTTTTGCTTGCGC
CGACTGATTCAAGTCATGCGGTCTGGCTACGATTTTTTACCCCTACCGTCGAAGTTCCATTGTGTGGTCATGCGACGATT
GCGGCTCACTATGTGCGTGCCCATGAGCTGCAATTAGGCTCATGCCAACTCCGACATAAAACTGGAGCCGGGATACTGCC
AATTGAAGTTATCCAAGCCAATAATGATTATCAAATTATTATGACTCAAGCTGCAATTGAGTTTGGCCCGATCATTGATG
GACAATCCAAACAGGCTTTACTTGATGCGCTTGGTCTGACTATTCACGACCTGCATTACGCATGCCCGATTCAAATAGTC
TCAACGGGGCATTCCAAAGTATTAATTGGGATTAACCAGCGCACAAAGCTTGATCAACTGCGCCCGAATCTTGCAGCCCT
TACCCTGCTGAGTAAACAAATTGGCTGCAATGGCTATTTTGTCTATACATTAGACTCTGATGATCCGGCGATTCTTTCCT
ATGGGCGGATGTTTTCACCAGCGATTGGGATCAATGAAGATCCGGTTACGGGGAATGCAAATGGGCCACTCGGAGCCTAC
TTAGTGCATCATCGATTGGTTGCCCACAACGGAATCCATTTGCGGTTTACTGCATGTCAAGGTGTTGCGATTGGGAGGAC
TGGGTATATTGAGGTTCAGGTGTTGATTGAAGCTGATGAGCCTGTTTTGGTTAAAGTTGGGGGTCATGCAGTGATTGTTT
TTCAAACGAGCATTCAGTTGTAA

Upstream 100 bases:

>100_bases
GAAAATGAGAGTTTTATCATTCACATTTAACCTTTCCCAATCGCAAAACTAGGCTACACTAGACCAATACTAATCATTTG
ATTAAAGGTTTAAACCCGCT

Downstream 100 bases:

>100_bases
TATTTGCTGCCGTTAGGAAAAAATAATCGCATGGCCACAGGCAATAGGCGGGATGACCAGTTTTAGGGCGTTGGATTATA
CTGATCAGACTCGTCCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKQVNVYQVDAFTQHKFRGNPAGVVTHADDLSTHEMQQLARELNNSETVFLLAPTDSSHAVWLRFFTPTVEVPLCGHATI
AAHYVRAHELQLGSCQLRHKTGAGILPIEVIQANNDYQIIMTQAAIEFGPIIDGQSKQALLDALGLTIHDLHYACPIQIV
STGHSKVLIGINQRTKLDQLRPNLAALTLLSKQIGCNGYFVYTLDSDDPAILSYGRMFSPAIGINEDPVTGNANGPLGAY
LVHHRLVAHNGIHLRFTACQGVAIGRTGYIEVQVLIEADEPVLVKVGGHAVIVFQTSIQL

Sequences:

>Translated_300_residues
MKQVNVYQVDAFTQHKFRGNPAGVVTHADDLSTHEMQQLARELNNSETVFLLAPTDSSHAVWLRFFTPTVEVPLCGHATI
AAHYVRAHELQLGSCQLRHKTGAGILPIEVIQANNDYQIIMTQAAIEFGPIIDGQSKQALLDALGLTIHDLHYACPIQIV
STGHSKVLIGINQRTKLDQLRPNLAALTLLSKQIGCNGYFVYTLDSDDPAILSYGRMFSPAIGINEDPVTGNANGPLGAY
LVHHRLVAHNGIHLRFTACQGVAIGRTGYIEVQVLIEADEPVLVKVGGHAVIVFQTSIQL
>Mature_300_residues
MKQVNVYQVDAFTQHKFRGNPAGVVTHADDLSTHEMQQLARELNNSETVFLLAPTDSSHAVWLRFFTPTVEVPLCGHATI
AAHYVRAHELQLGSCQLRHKTGAGILPIEVIQANNDYQIIMTQAAIEFGPIIDGQSKQALLDALGLTIHDLHYACPIQIV
STGHSKVLIGINQRTKLDQLRPNLAALTLLSKQIGCNGYFVYTLDSDDPAILSYGRMFSPAIGINEDPVTGNANGPLGAY
LVHHRLVAHNGIHLRFTACQGVAIGRTGYIEVQVLIEADEPVLVKVGGHAVIVFQTSIQL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI74316009, Length=252, Percent_Identity=32.1428571428571, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI62177133, Length=252, Percent_Identity=32.1428571428571, Blast_Score=102, Evalue=5e-22,
Organism=Escherichia coli, GI1787737, Length=289, Percent_Identity=51.5570934256055, Blast_Score=286, Evalue=9e-79,
Organism=Caenorhabditis elegans, GI17542160, Length=290, Percent_Identity=26.551724137931, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17542154, Length=290, Percent_Identity=26.551724137931, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17542158, Length=270, Percent_Identity=29.6296296296296, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17542152, Length=270, Percent_Identity=29.6296296296296, Blast_Score=82, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6321818, Length=302, Percent_Identity=27.1523178807947, Blast_Score=96, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32691; Mature: 32691

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVNVYQVDAFTQHKFRGNPAGVVTHADDLSTHEMQQLARELNNSETVFLLAPTDSSHA
CCCCEEEEEECEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCE
VWLRFFTPTVEVPLCGHATIAAHYVRAHELQLGSCQLRHKTGAGILPIEVIQANNDYQII
EEEEEECCEEEEEECCCHHHHHHEEEEEEEEECCEEEEECCCCCEEEEEEEECCCCEEEE
MTQAAIEFGPIIDGQSKQALLDALGLTIHDLHYACPIQIVSTGHSKVLIGINQRTKLDQL
EEEEEEEECCCCCCCCHHHHHHHHCCEEEEEEEECEEEEEECCCCEEEEEECCCCCHHHH
RPNLAALTLLSKQIGCNGYFVYTLDSDDPAILSYGRMFSPAIGINEDPVTGNANGPLGAY
CCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHH
LVHHRLVAHNGIHLRFTACQGVAIGRTGYIEVQVLIEADEPVLVKVGGHAVIVFQTSIQL
HHHHHHHHCCCEEEEEEEECCEEECCCCEEEEEEEEECCCCEEEEECCCEEEEEEEEECC
>Mature Secondary Structure
MKQVNVYQVDAFTQHKFRGNPAGVVTHADDLSTHEMQQLARELNNSETVFLLAPTDSSHA
CCCCEEEEEECEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCE
VWLRFFTPTVEVPLCGHATIAAHYVRAHELQLGSCQLRHKTGAGILPIEVIQANNDYQII
EEEEEECCEEEEEECCCHHHHHHEEEEEEEEECCEEEEECCCCCEEEEEEEECCCCEEEE
MTQAAIEFGPIIDGQSKQALLDALGLTIHDLHYACPIQIVSTGHSKVLIGINQRTKLDQL
EEEEEEEECCCCCCCCHHHHHHHHCCEEEEEEEECEEEEEECCCCEEEEEECCCCCHHHH
RPNLAALTLLSKQIGCNGYFVYTLDSDDPAILSYGRMFSPAIGINEDPVTGNANGPLGAY
CCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHH
LVHHRLVAHNGIHLRFTACQGVAIGRTGYIEVQVLIEADEPVLVKVGGHAVIVFQTSIQL
HHHHHHHHCCCEEEEEEEECCEEECCCCEEEEEEEEECCCCEEEEECCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]