Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159898551

Identifier: 159898551

GI number: 159898551

Start: 2519603

End: 2520895

Strand: Reverse

Name: 159898551

Synonym: Haur_2027

Alternate gene names: NA

Gene position: 2520895-2519603 (Counterclockwise)

Preceding gene: 159898552

Following gene: 159898550

Centisome position: 39.72

GC content: 50.19

Gene sequence:

>1293_bases
ATGCAACAGCTAAGCAAACGCTTGAATATTCCAATTGCAGGGTTATGGTTATTAGCAGCAACCTTTATCACAACCATTGG
CAATGGAATGCAAACTTTTACGATCGGGCTTTTACTCTATGATCGAACTGGCTCTGCCGCAGCTTTTGGTGGAGTGATTA
TTCTCGAACAGGGCTTAACCTTCTTAATGCAGTTTATTGCAGGACCATGGGTTGACCGCGGTAGTCCCAAACGCACATGT
ATTCAGGTTGAAATTATTCGCGGTCTATTTGTCTGTTTTGCCAGCCTGATGCTTGGTGGCGATCAAGTGGTGCTCTGGAT
TATGTTGATGACGCTGGTGATTCGGGTGGCCCATCCATTTTATCGGGCGGCTACCTTTGCCCTCGCCCCAGCCGCCATTC
CCCGCGATTCGCTTGGGCGCTACAACGGCTATACCAATATTAGCTTGCAAGCCGGTCAATTATTGGGCGTAATTGTTGCC
AGCCCAGTGTTCTATTACCTTGGGCCTGCTGTTGCCTTTTTTATCAATGGTTTAACCTTTCTCTTTTCGGCACTTGCGGT
TAGTTTTATCCAATTAACTGATCATGAAGTAGTTGCCGAAGCCAAAGCCCAGGTTCAGAATGCTTGGCAACAGATTATTG
GCGGTTGGGGTGAGGTGATCGGCTTGCTGCGCCGCGAAGTCGGCTTTATTTGGCATTTGTTGCTCAATACGATTGATGCA
GTCGCCGTGCACCTGTTTAATTTGATCGCCGTGCCACTGATTGCTGCCCGCTACAATGGCAGTGTCTATTGGCTCTCAGT
AATCGAATGTGCTTATGCAATCGGAGCGATGATCTCTGGTGGCGTGGTGGAGCCACTTTCCAAACGCTGGGGATCGCGTA
CCTCAACTATGGTCGGGATTGGCGGGCAAGCCCTGTGTTTTATGCTGCTTGGGTTCTTCAGCAACCAATGGCTCACCATT
CTGCTGTGCTTCGGCTTAGGCGCATTCAACACGATCTCGTGGACGGTTTTGATGACCACGCTGCAATTACGGATTCGCGG
AGCGATCAAAGGGCGGATTGGAATCACGCGCAATTTGCTAACGTCACTAATCACGGCGATCAGCATTCCATTGATTGCCA
GTGCTACCAATAGTTCGCTCAATTGGGCCTTGCTGCTCAGTGGGGCAATTTGTTTCGGCTTTGCTGTACTGGCGTTGGTG
CTTGGCAGTCCGCGATTTTTGGGCTGGCGCTTACTTGGCGAAGAACCTGTCGCCGCAACCACCCCAGCTGCTTTAGCGGA
AACAAGCTCATGA

Upstream 100 bases:

>100_bases
GGCCTGCATGATCGTTGGCGCATTAATCCATTGGCTTGCGCCAAATTCAGCATTGGCCTAACGAATACACAAAAGCGTCT
GGAACCCTATTGAGGAACGC

Downstream 100 bases:

>100_bases
ACTTAACCACAACAGTGCTCAGCCTGCAACTTGAGCAACCGTTTGTCAGCAATAAGGGCTCGACGACTACGGTGCACCAA
GTTGTAATCAAATTAACTTG

Product: major facilitator transporter

Products: NA

Alternate protein names: Macrolide-Efflux Protein

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MQQLSKRLNIPIAGLWLLAATFITTIGNGMQTFTIGLLLYDRTGSAAAFGGVIILEQGLTFLMQFIAGPWVDRGSPKRTC
IQVEIIRGLFVCFASLMLGGDQVVLWIMLMTLVIRVAHPFYRAATFALAPAAIPRDSLGRYNGYTNISLQAGQLLGVIVA
SPVFYYLGPAVAFFINGLTFLFSALAVSFIQLTDHEVVAEAKAQVQNAWQQIIGGWGEVIGLLRREVGFIWHLLLNTIDA
VAVHLFNLIAVPLIAARYNGSVYWLSVIECAYAIGAMISGGVVEPLSKRWGSRTSTMVGIGGQALCFMLLGFFSNQWLTI
LLCFGLGAFNTISWTVLMTTLQLRIRGAIKGRIGITRNLLTSLITAISIPLIASATNSSLNWALLLSGAICFGFAVLALV
LGSPRFLGWRLLGEEPVAATTPAALAETSS

Sequences:

>Translated_430_residues
MQQLSKRLNIPIAGLWLLAATFITTIGNGMQTFTIGLLLYDRTGSAAAFGGVIILEQGLTFLMQFIAGPWVDRGSPKRTC
IQVEIIRGLFVCFASLMLGGDQVVLWIMLMTLVIRVAHPFYRAATFALAPAAIPRDSLGRYNGYTNISLQAGQLLGVIVA
SPVFYYLGPAVAFFINGLTFLFSALAVSFIQLTDHEVVAEAKAQVQNAWQQIIGGWGEVIGLLRREVGFIWHLLLNTIDA
VAVHLFNLIAVPLIAARYNGSVYWLSVIECAYAIGAMISGGVVEPLSKRWGSRTSTMVGIGGQALCFMLLGFFSNQWLTI
LLCFGLGAFNTISWTVLMTTLQLRIRGAIKGRIGITRNLLTSLITAISIPLIASATNSSLNWALLLSGAICFGFAVLALV
LGSPRFLGWRLLGEEPVAATTPAALAETSS
>Mature_430_residues
MQQLSKRLNIPIAGLWLLAATFITTIGNGMQTFTIGLLLYDRTGSAAAFGGVIILEQGLTFLMQFIAGPWVDRGSPKRTC
IQVEIIRGLFVCFASLMLGGDQVVLWIMLMTLVIRVAHPFYRAATFALAPAAIPRDSLGRYNGYTNISLQAGQLLGVIVA
SPVFYYLGPAVAFFINGLTFLFSALAVSFIQLTDHEVVAEAKAQVQNAWQQIIGGWGEVIGLLRREVGFIWHLLLNTIDA
VAVHLFNLIAVPLIAARYNGSVYWLSVIECAYAIGAMISGGVVEPLSKRWGSRTSTMVGIGGQALCFMLLGFFSNQWLTI
LLCFGLGAFNTISWTVLMTTLQLRIRGAIKGRIGITRNLLTSLITAISIPLIASATNSSLNWALLLSGAICFGFAVLALV
LGSPRFLGWRLLGEEPVAATTPAALAETSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46368; Mature: 46368

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHCCCC
>Mature Secondary Structure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CCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA