Click here to switch to the map view.

The map label for this gene is yobV [H]

Identifier: 159898534

GI number: 159898534

Start: 2500443

End: 2501405

Strand: Direct

Name: yobV [H]

Synonym: Haur_2010

Alternate gene names: 159898534

Gene position: 2500443-2501405 (Clockwise)

Preceding gene: 159898531

Following gene: 159898535

Centisome position: 39.4

GC content: 54.41

Gene sequence:

>963_bases
ATGAATCGTGTTGATCGATTGCTGGCTATCGTGCTTGAGTTACAGGCGCATCAACGGCGACGGGCCGCTGATCTTGCCGC
GACGTTTGAAATCAGCGTGCGCACCGTGTATCGTGATATCCTCGCACTGTGCGAGGCAGGTGTGCCGATTATTAGTGTGC
CAGGCCAAGGCTATTCCCTCGTTGAAGGCTACTTTTTACCACCACTCCAGTTGACTCCCGCCGAAGCCTTGCTGATTGTG
CAAGGACTACGGGCGCTTGGTCACTTGTATGATCCGGCCTATGCCACTGCGGCCCGAACGGCAACCACAAAAATTATAAC
CGTGCTTCCGCCACCGCTGCGCCTGCATGTGACCACGATGCAGCAAGGGATGGCGATTATCGCAGCCCGTGATACGGCGA
TCCAGCAAGGCCACTTGACAGTGCTGCGGGAAGCGATTGTGGCCCAGCGCTCGCTTCGAATGGGCTATCATGGGCGCACC
ACCCCCTTTGCGGCTGCGCGTCACACGACTCGTATGGTCGATCCCTATCAGCTAACCTGTGTCCGTACCGTCTGGTATCT
CCACGGCTTTTGTCACCTTCGTCAGTCGATGCGCAATTTTCGAGTCGAACGGATTGGTGACCTGACGATGCTGGATCACA
CATTTGAACCAACGGGTACATCACCCATCCCTCAGGATGCCACCCAGCTTGATCAGCCAATTTGTGTCCAAGTATTGTTT
GCAGAACAGATAAAAACATGGGTACTTGAAGATCTGCCCTTTTTTGTAGTCAGCACAATCCAGCAACCAGACGGACTCTT
GGCAATCCTGCATGTTCGTGCGATCACGGATGTGGTGCAGTGGATTTTGAGTTGGGGACGGTTTGCGCGGGTGCTCGAAC
CGATTGCCCTGCAAACGCTCATCCGTGATCAGGGTTGGGCAATTCAACGAATGTACGATTTGCCTAAAACGCTCCTGCCA
TAG

Upstream 100 bases:

>100_bases
ACTCCTTTCAATTGGTATCTAGTCTGGTCGTTGCAGTATAGCATTCGCAAACTTCGATAGCGATGGTCGATTCTGTCGAT
GTTTGCCCGAGAGAGATATT

Downstream 100 bases:

>100_bases
GGGTGTCACAGCGGGGTGTTAAGCTGATGTCGTCTCGCCTATTAGAGGAGTCCTGATCAATGGTTCAGCTGAATTGGTTT
GAAATTCCCGCCACCAACTT

Product: helix-turn-helix type 11 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MNRVDRLLAIVLELQAHQRRRAADLAATFEISVRTVYRDILALCEAGVPIISVPGQGYSLVEGYFLPPLQLTPAEALLIV
QGLRALGHLYDPAYATAARTATTKIITVLPPPLRLHVTTMQQGMAIIAARDTAIQQGHLTVLREAIVAQRSLRMGYHGRT
TPFAAARHTTRMVDPYQLTCVRTVWYLHGFCHLRQSMRNFRVERIGDLTMLDHTFEPTGTSPIPQDATQLDQPICVQVLF
AEQIKTWVLEDLPFFVVSTIQQPDGLLAILHVRAITDVVQWILSWGRFARVLEPIALQTLIRDQGWAIQRMYDLPKTLLP

Sequences:

>Translated_320_residues
MNRVDRLLAIVLELQAHQRRRAADLAATFEISVRTVYRDILALCEAGVPIISVPGQGYSLVEGYFLPPLQLTPAEALLIV
QGLRALGHLYDPAYATAARTATTKIITVLPPPLRLHVTTMQQGMAIIAARDTAIQQGHLTVLREAIVAQRSLRMGYHGRT
TPFAAARHTTRMVDPYQLTCVRTVWYLHGFCHLRQSMRNFRVERIGDLTMLDHTFEPTGTSPIPQDATQLDQPICVQVLF
AEQIKTWVLEDLPFFVVSTIQQPDGLLAILHVRAITDVVQWILSWGRFARVLEPIALQTLIRDQGWAIQRMYDLPKTLLP
>Mature_320_residues
MNRVDRLLAIVLELQAHQRRRAADLAATFEISVRTVYRDILALCEAGVPIISVPGQGYSLVEGYFLPPLQLTPAEALLIV
QGLRALGHLYDPAYATAARTATTKIITVLPPPLRLHVTTMQQGMAIIAARDTAIQQGHLTVLREAIVAQRSLRMGYHGRT
TPFAAARHTTRMVDPYQLTCVRTVWYLHGFCHLRQSMRNFRVERIGDLTMLDHTFEPTGTSPIPQDATQLDQPICVQVLF
AEQIKTWVLEDLPFFVVSTIQQPDGLLAILHVRAITDVVQWILSWGRFARVLEPIALQTLIRDQGWAIQRMYDLPKTLLP

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 36025; Mature: 36025

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVDRLLAIVLELQAHQRRRAADLAATFEISVRTVYRDILALCEAGVPIISVPGQGYSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHH
VEGYFLPPLQLTPAEALLIVQGLRALGHLYDPAYATAARTATTKIITVLPPPLRLHVTTM
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCEEEEEEH
QQGMAIIAARDTAIQQGHLTVLREAIVAQRSLRMGYHGRTTPFAAARHTTRMVDPYQLTC
HCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHH
VRTVWYLHGFCHLRQSMRNFRVERIGDLTMLDHTFEPTGTSPIPQDATQLDQPICVQVLF
HHHHHHHHHHHHHHHHHHHCCHHHHCCCCEECCCCCCCCCCCCCCCHHHCCCHHHHHHHH
AEQIKTWVLEDLPFFVVSTIQQPDGLLAILHVRAITDVVQWILSWGRFARVLEPIALQTL
HHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRDQGWAIQRMYDLPKTLLP
HHCCCCHHHHHHHCHHHHCC
>Mature Secondary Structure
MNRVDRLLAIVLELQAHQRRRAADLAATFEISVRTVYRDILALCEAGVPIISVPGQGYSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHH
VEGYFLPPLQLTPAEALLIVQGLRALGHLYDPAYATAARTATTKIITVLPPPLRLHVTTM
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCEEEEEEH
QQGMAIIAARDTAIQQGHLTVLREAIVAQRSLRMGYHGRTTPFAAARHTTRMVDPYQLTC
HCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHH
VRTVWYLHGFCHLRQSMRNFRVERIGDLTMLDHTFEPTGTSPIPQDATQLDQPICVQVLF
HHHHHHHHHHHHHHHHHHHCCHHHHCCCCEECCCCCCCCCCCCCCCHHHCCCHHHHHHHH
AEQIKTWVLEDLPFFVVSTIQQPDGLLAILHVRAITDVVQWILSWGRFARVLEPIALQTL
HHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRDQGWAIQRMYDLPKTLLP
HHCCCCHHHHHHHCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]