Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159898511

Identifier: 159898511

GI number: 159898511

Start: 2445454

End: 2446116

Strand: Reverse

Name: 159898511

Synonym: Haur_1987

Alternate gene names: NA

Gene position: 2446116-2445454 (Counterclockwise)

Preceding gene: 159898512

Following gene: 159898505

Centisome position: 38.54

GC content: 47.66

Gene sequence:

>663_bases
ATGAACAACAATAAAAATGTAAATCCTCCATTTCGGCTCTCACTTGATGAGGCACGCAATAAGTTGCCAGCCCTAGTAGC
AGCAGAACTCGATAATGAGCCTGATCTGGAAACGCGCTACGCCGATGTGTATGCAGCGCTGGATTTCTACGATGATCTGG
TTGATGAATACGATGAACTTTATTACACGCTTAAAGAATATGAAACGCAGCCAGTGATCGACCATCACATTAGCCCACCA
ATCGATTTGTTTGATCGGGTTTATCCGCCTAAAAAAGCGGCTGGGCCATCGTTGCTCGAACGAACCAAGGCTATATTGAG
CCGCTTGGTGCTGCCATTACCAGCCTTAGCCCAACCAAAAGCTGCAATCCTCAGCTTAGATGATGAAGATTTGGAATATA
TTTATGATGTGATTGAACACCCACCAGCAGCAATCGATCTGTCGGTGCACGTCTGGCTTGAAGTTATCTCCGCTACGCAG
TTGGAAATTGTGGTTACTTTAGCCCCAGCGAGCGGGCCTCCTTGGACGGTTGCCGTCTTGCTTGGCGATACTGAGCTTCC
GATCATTGGCACGAATAGCGCTTACCATGAAACTCGCTTTGGACCATTAAGCAGCTTTCCCACCACAAGCATTACGCTGG
TAGCAATTCCTAACCCAGCTTAG

Upstream 100 bases:

>100_bases
CAACTCAATGTTGATCCTCATACTATCCACTCACAAAAATATCGTGCCCTGAAGATCATCCGAAACCACCCCAAGTTGCG
TGAATTGCTGGAGAGTATCC

Downstream 100 bases:

>100_bases
CCCGCCGTTCACGATCAAAACTGTAGATCATGGTCAGCGCAGTTACCCCCATCGCTGCGCTGCCCAAACCTGAACTCAAG
ATAAGCCCAACCAGACTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNNNKNVNPPFRLSLDEARNKLPALVAAELDNEPDLETRYADVYAALDFYDDLVDEYDELYYTLKEYETQPVIDHHISPP
IDLFDRVYPPKKAAGPSLLERTKAILSRLVLPLPALAQPKAAILSLDDEDLEYIYDVIEHPPAAIDLSVHVWLEVISATQ
LEIVVTLAPASGPPWTVAVLLGDTELPIIGTNSAYHETRFGPLSSFPTTSITLVAIPNPA

Sequences:

>Translated_220_residues
MNNNKNVNPPFRLSLDEARNKLPALVAAELDNEPDLETRYADVYAALDFYDDLVDEYDELYYTLKEYETQPVIDHHISPP
IDLFDRVYPPKKAAGPSLLERTKAILSRLVLPLPALAQPKAAILSLDDEDLEYIYDVIEHPPAAIDLSVHVWLEVISATQ
LEIVVTLAPASGPPWTVAVLLGDTELPIIGTNSAYHETRFGPLSSFPTTSITLVAIPNPA
>Mature_220_residues
MNNNKNVNPPFRLSLDEARNKLPALVAAELDNEPDLETRYADVYAALDFYDDLVDEYDELYYTLKEYETQPVIDHHISPP
IDLFDRVYPPKKAAGPSLLERTKAILSRLVLPLPALAQPKAAILSLDDEDLEYIYDVIEHPPAAIDLSVHVWLEVISATQ
LEIVVTLAPASGPPWTVAVLLGDTELPIIGTNSAYHETRFGPLSSFPTTSITLVAIPNPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24356; Mature: 24356

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: PS00659 GLYCOSYL_HYDROL_F5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNKNVNPPFRLSLDEARNKLPALVAAELDNEPDLETRYADVYAALDFYDDLVDEYDEL
CCCCCCCCCCEEEEHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YYTLKEYETQPVIDHHISPPIDLFDRVYPPKKAAGPSLLERTKAILSRLVLPLPALAQPK
HHHHHHHCCCCCHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
AAILSLDDEDLEYIYDVIEHPPAAIDLSVHVWLEVISATQLEIVVTLAPASGPPWTVAVL
EEEEECCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEE
LGDTELPIIGTNSAYHETRFGPLSSFPTTSITLVAIPNPA
ECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MNNNKNVNPPFRLSLDEARNKLPALVAAELDNEPDLETRYADVYAALDFYDDLVDEYDEL
CCCCCCCCCCEEEEHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YYTLKEYETQPVIDHHISPPIDLFDRVYPPKKAAGPSLLERTKAILSRLVLPLPALAQPK
HHHHHHHCCCCCHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
AAILSLDDEDLEYIYDVIEHPPAAIDLSVHVWLEVISATQLEIVVTLAPASGPPWTVAVL
EEEEECCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEE
LGDTELPIIGTNSAYHETRFGPLSSFPTTSITLVAIPNPA
ECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA