| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898404
Identifier: 159898404
GI number: 159898404
Start: 2246767
End: 2248077
Strand: Direct
Name: 159898404
Synonym: Haur_1880
Alternate gene names: NA
Gene position: 2246767-2248077 (Clockwise)
Preceding gene: 159898403
Following gene: 159898405
Centisome position: 35.4
GC content: 48.36
Gene sequence:
>1311_bases ATGATTCACAATCAAGAATTTATCATTCGTAAATCTGATATTGCTAATCCACAAAGTCTGCCTGAATTGATCGAAACGCT GGTGAGTGGCGATGTATTACGTTGGTATGTTTCTAAAGTAACGGCTGATGAGCTGGTGGTCGAGGCCACGCTTTATAGCG AACATCTGGCCGACCCGCCCGAGAGTGTGCTTGGGCAGTTTTACCCTGGCAAGAGCGCTGTGTTGAACATTGTGCCAACC GGAGTTGGTTGTGATATTGGCGGGTATGCTGGCGATGCTGGCCCCGCCACAGCCCTGTTGGCCAGTTGCTGCGATTATTT AGTGACAAATCCCAATGCAGTTAATGCTTCAAATTTTATCTTGATGGATAAAAATTTAGTGTATACCGAAGGCTACTGCA TTGATCTCTTCTCGCGTGGTTTGATTAACCTGCACCTGCCATATAGCAATAAAATTGGCTTGATTATCGAAAAAACCGAT GCTGAGCACTTGGATGTGGTGTTTAATATTCTCAATACCGTTCGCGCAGTTTATGGGGTGAATATTGAAGAGTTTGTGAT CACCGATGAGGCGATCGGTGGGCGTTGTATTCAGCATAGTTCTGGCAGCTATGTTGGCAGTATCGACAATCCGGCGACCT TATTCCGTGCTTGCGAGCAATTGATCGCCAAGGGTGTAACCGCAATTGCAGTCACCAGCAACATCCAAGATTTGCCTGCT GATAGCTATGCCGAGCACTTTTCGGGCCGACATCCCAATCCAGTTGGTGGAGCCGAGGCGATTATCTCGCACCTGATCGC CAAGAAATATCGCTTGCCCGCCGCCCATGCCCCGATGATTAACCTCAAGCAAATTGACCTTGAAGATCCGATTGTCGATG CCCGTGGCGCAGGCGAAATTACCTCGCACAGTGGGATGGCGAGCGTGCTAATTGGCTTAGCTCAGGCTCCGCAAATTACC GCTCGGCCAACTTGCCGCATCGCCGACACGATTAATATTAATAATGTTGTGGCAGTTGTGACACCTGCTAGTGCCTTGGG TGGCATTCCGGTGTTGTATGCCCAAAAATTTAATATTCCCGTGATTGCAGTGCACAATAATGCCACAATTTTGGAGATTA CGCCCGATCGCTTCCCGCTTAATACCGTGATTGAAGTGCAAAATTATGCTGAAGCCGCCGGAATTATTATGGCGCTCAAG CGTGGCCTAAACTTGAAGAGTATCCTACGACCGTTGGAAACCTTGCGCTATCAGCGTCAGGCAGTCGCTACGACTGTCGT AAACGATGCAATGATAGCTGAACTAGCCTAA
Upstream 100 bases:
>100_bases GCATTTATCAGATGAGGAACTTGCTTTACTCTCACAAGATCAACCATAGCCGCCGCGTCCGCAACGATAGCTTTCTTTTT AACTAATGAAGGGCGACAGC
Downstream 100 bases:
>100_bases CATCTTTGGTTGGCAACGATGGATCTGGGTCGTAGCAATACGGCCCAGCTTGGAGTACCCGACTGTGACAGACCAACTTC CTTCAGCACTCCCGCTAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 436
Protein sequence:
>436_residues MIHNQEFIIRKSDIANPQSLPELIETLVSGDVLRWYVSKVTADELVVEATLYSEHLADPPESVLGQFYPGKSAVLNIVPT GVGCDIGGYAGDAGPATALLASCCDYLVTNPNAVNASNFILMDKNLVYTEGYCIDLFSRGLINLHLPYSNKIGLIIEKTD AEHLDVVFNILNTVRAVYGVNIEEFVITDEAIGGRCIQHSSGSYVGSIDNPATLFRACEQLIAKGVTAIAVTSNIQDLPA DSYAEHFSGRHPNPVGGAEAIISHLIAKKYRLPAAHAPMINLKQIDLEDPIVDARGAGEITSHSGMASVLIGLAQAPQIT ARPTCRIADTININNVVAVVTPASALGGIPVLYAQKFNIPVIAVHNNATILEITPDRFPLNTVIEVQNYAEAAGIIMALK RGLNLKSILRPLETLRYQRQAVATTVVNDAMIAELA
Sequences:
>Translated_436_residues MIHNQEFIIRKSDIANPQSLPELIETLVSGDVLRWYVSKVTADELVVEATLYSEHLADPPESVLGQFYPGKSAVLNIVPT GVGCDIGGYAGDAGPATALLASCCDYLVTNPNAVNASNFILMDKNLVYTEGYCIDLFSRGLINLHLPYSNKIGLIIEKTD AEHLDVVFNILNTVRAVYGVNIEEFVITDEAIGGRCIQHSSGSYVGSIDNPATLFRACEQLIAKGVTAIAVTSNIQDLPA DSYAEHFSGRHPNPVGGAEAIISHLIAKKYRLPAAHAPMINLKQIDLEDPIVDARGAGEITSHSGMASVLIGLAQAPQIT ARPTCRIADTININNVVAVVTPASALGGIPVLYAQKFNIPVIAVHNNATILEITPDRFPLNTVIEVQNYAEAAGIIMALK RGLNLKSILRPLETLRYQRQAVATTVVNDAMIAELA >Mature_436_residues MIHNQEFIIRKSDIANPQSLPELIETLVSGDVLRWYVSKVTADELVVEATLYSEHLADPPESVLGQFYPGKSAVLNIVPT GVGCDIGGYAGDAGPATALLASCCDYLVTNPNAVNASNFILMDKNLVYTEGYCIDLFSRGLINLHLPYSNKIGLIIEKTD AEHLDVVFNILNTVRAVYGVNIEEFVITDEAIGGRCIQHSSGSYVGSIDNPATLFRACEQLIAKGVTAIAVTSNIQDLPA DSYAEHFSGRHPNPVGGAEAIISHLIAKKYRLPAAHAPMINLKQIDLEDPIVDARGAGEITSHSGMASVLIGLAQAPQIT ARPTCRIADTININNVVAVVTPASALGGIPVLYAQKFNIPVIAVHNNATILEITPDRFPLNTVIEVQNYAEAAGIIMALK RGLNLKSILRPLETLRYQRQAVATTVVNDAMIAELA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021763 [H]
Pfam domain/function: PF11805 DUF3326 [H]
EC number: NA
Molecular weight: Translated: 46782; Mature: 46782
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHNQEFIIRKSDIANPQSLPELIETLVSGDVLRWYVSKVTADELVVEATLYSEHLADPP CCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCH ESVLGQFYPGKSAVLNIVPTGVGCDIGGYAGDAGPATALLASCCDYLVTNPNAVNASNFI HHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE LMDKNLVYTEGYCIDLFSRGLINLHLPYSNKIGLIIEKTDAEHLDVVFNILNTVRAVYGV EEECCEEEECCEEHHHHCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC NIEEFVITDEAIGGRCIQHSSGSYVGSIDNPATLFRACEQLIAKGVTAIAVTSNIQDLPA CHHHEEEECCCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC DSYAEHFSGRHPNPVGGAEAIISHLIAKKYRLPAAHAPMINLKQIDLEDPIVDARGAGEI HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCC TSHSGMASVLIGLAQAPQITARPTCRIADTININNVVAVVTPASALGGIPVLYAQKFNIP CCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECHHHHCCCEEEEEEECCCE VIAVHNNATILEITPDRFPLNTVIEVQNYAEAAGIIMALKRGLNLKSILRPLETLRYQRQ EEEEECCCEEEEECCCCCCCHHHEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH AVATTVVNDAMIAELA HHHHHHHHHHHHHHCC >Mature Secondary Structure MIHNQEFIIRKSDIANPQSLPELIETLVSGDVLRWYVSKVTADELVVEATLYSEHLADPP CCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCH ESVLGQFYPGKSAVLNIVPTGVGCDIGGYAGDAGPATALLASCCDYLVTNPNAVNASNFI HHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE LMDKNLVYTEGYCIDLFSRGLINLHLPYSNKIGLIIEKTDAEHLDVVFNILNTVRAVYGV EEECCEEEECCEEHHHHCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC NIEEFVITDEAIGGRCIQHSSGSYVGSIDNPATLFRACEQLIAKGVTAIAVTSNIQDLPA CHHHEEEECCCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC DSYAEHFSGRHPNPVGGAEAIISHLIAKKYRLPAAHAPMINLKQIDLEDPIVDARGAGEI HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCC TSHSGMASVLIGLAQAPQITARPTCRIADTININNVVAVVTPASALGGIPVLYAQKFNIP CCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECHHHHCCCEEEEEEECCCE VIAVHNNATILEITPDRFPLNTVIEVQNYAEAAGIIMALKRGLNLKSILRPLETLRYQRQ EEEEECCCEEEEECCCCCCCHHHEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH AVATTVVNDAMIAELA HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3041005 [H]