Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159898346

Identifier: 159898346

GI number: 159898346

Start: 2119320

End: 2120891

Strand: Direct

Name: 159898346

Synonym: Haur_1822

Alternate gene names: NA

Gene position: 2119320-2120891 (Clockwise)

Preceding gene: 159898344

Following gene: 159898354

Centisome position: 33.39

GC content: 41.48

Gene sequence:

>1572_bases
ATGGCACACCCAATTTTAGTGCTTGGCAATGTTCGATCAGGTCGCCATAGTCTGATTCAGGCCTTAATTCAAGCAAAACA
ACCTGTAGAACAACCTGTTGCACTGATCTATGAACCAAATAATCGTACCCGTGCCCAGTTTGGTTTTGAGGGACATACGA
TCACATTTGAATGGATAACCAATTATGCCCTTGAGCCTGAGGATGAACTTGAAGCCTTCGTGCAACGCCCTTGCGTTGGG
GTGATTTATTGTATCGAGCCAGGCCACGATCGTGATCATTGGTTGATGGTTCCACCAATGAGCCAAGCTCGCCAGTTAGT
CGATTTTGTTAAATCTTTTTGGCAATCTAATAAAGCTTGGGATACGTTGCCATGGTTGTGGGTGCTCACGAAATCTGATC
TTGCAAGCGCGAATTTGCTAGCGCCATTGATGGCCAAAATTGATCCATATGGACAGCCACAGCAACCTATTTGCTGTTCG
GCCTTGGATGCGCACAGTTTTGAGCCAATTTATGCTTGGCTGAGGACGATTGTTCAAACTTGCCCAACCTGCATTGATCA
ACTTCAACCATTAGCTGAATTTCGTGCACATATTCCAGCTTTACCCTTGCCGATCAACTGGCATGCAGTGCCAAGCTATC
CCAAACTGAATCTAGCAATAATGGCAATCGTGCGGCAAGCCTTGCCGCCTGTGTGGCAAATTAGCGAGTATTTGCCACAA
CTCGGTTTACATATAAAAATTGAAATCGCTGGCATGGCTATCAATCAAGCCGAAATTCAGCCTTGGATTGGTGAAGAGTT
ACCCTGTTATCTTGATTGGACAACTCCAATCGAGCCACAGATCTTGGAAATTCCACCACCGAATCACTCAATTATGCTTA
GCTTGAAGCCCAATCAATTGGAAGTGATTCCGATGGATGTTCCTACCAGTTTGCTTAAAACAATTCATAGTTTAGGTGCG
AGTCGGCCCGTTTTAGCATTATTGATTGATCAACAAACGACAAACGTCTTTTGGGTTTGTCTAAATGATTATATTGATAA
AATTAGTTTGCCAGCCCAAGCTGGCCAATTTAATCATTCAATCCATACAACAATCTTTATTCCGACTAAAAATCGCCTAG
AACATAATGATCTGACAATCGATATTTTAGGATTTTATGCCAAACGCGCTAAACTATTGGCAGCATTTTCAGTGTTTCGG
GAACAAAAAGCTAGATTAGACTATTTGAAAGATGCTGAATTAATCAACCAAGCGCAAATTTTTGCCCGAATGAACATTCA
CTATGATTTCTGGCAAAGCTGCCGCCTATGGAAACCAATTATTCAAATTTATCATAAACTTGTACATCTGGCAGATCATG
GCTTTACTGATCCAAAAATGCATAAGAAAGCCCAAAAACATCAACATTATGATGAATCAATTTGGGAATCAGAATGGGCT
GAAAAACCAGTTAAACTAGTTGATTCAATAACTTATAGTGGCATTATTTTTTGCTGGCTGGATATGCAACAACTAGCGGC
AAGTTATGAAATGCATTGCCGTTGTTGGTTCCTGCCAACATTTTCAGGATAA

Upstream 100 bases:

>100_bases
TCCAAACCTCCAAATAGTACCATTCAGCATTGCTTTAGACGTTCTAGATTGGGGATGGGTTACAATACCATGAAGGGTCG
TTGATATGTGAGGACGCAGT

Downstream 100 bases:

>100_bases
AGGATATTCAATGGTTATTGTCTGCGATAATCTCCGTGATTTTGCAATTCAGGCTCAATATTTGATTTTTTAAATTCAAG
TATCGTTATAGAAATGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 523; Mature: 522

Protein sequence:

>523_residues
MAHPILVLGNVRSGRHSLIQALIQAKQPVEQPVALIYEPNNRTRAQFGFEGHTITFEWITNYALEPEDELEAFVQRPCVG
VIYCIEPGHDRDHWLMVPPMSQARQLVDFVKSFWQSNKAWDTLPWLWVLTKSDLASANLLAPLMAKIDPYGQPQQPICCS
ALDAHSFEPIYAWLRTIVQTCPTCIDQLQPLAEFRAHIPALPLPINWHAVPSYPKLNLAIMAIVRQALPPVWQISEYLPQ
LGLHIKIEIAGMAINQAEIQPWIGEELPCYLDWTTPIEPQILEIPPPNHSIMLSLKPNQLEVIPMDVPTSLLKTIHSLGA
SRPVLALLIDQQTTNVFWVCLNDYIDKISLPAQAGQFNHSIHTTIFIPTKNRLEHNDLTIDILGFYAKRAKLLAAFSVFR
EQKARLDYLKDAELINQAQIFARMNIHYDFWQSCRLWKPIIQIYHKLVHLADHGFTDPKMHKKAQKHQHYDESIWESEWA
EKPVKLVDSITYSGIIFCWLDMQQLAASYEMHCRCWFLPTFSG

Sequences:

>Translated_523_residues
MAHPILVLGNVRSGRHSLIQALIQAKQPVEQPVALIYEPNNRTRAQFGFEGHTITFEWITNYALEPEDELEAFVQRPCVG
VIYCIEPGHDRDHWLMVPPMSQARQLVDFVKSFWQSNKAWDTLPWLWVLTKSDLASANLLAPLMAKIDPYGQPQQPICCS
ALDAHSFEPIYAWLRTIVQTCPTCIDQLQPLAEFRAHIPALPLPINWHAVPSYPKLNLAIMAIVRQALPPVWQISEYLPQ
LGLHIKIEIAGMAINQAEIQPWIGEELPCYLDWTTPIEPQILEIPPPNHSIMLSLKPNQLEVIPMDVPTSLLKTIHSLGA
SRPVLALLIDQQTTNVFWVCLNDYIDKISLPAQAGQFNHSIHTTIFIPTKNRLEHNDLTIDILGFYAKRAKLLAAFSVFR
EQKARLDYLKDAELINQAQIFARMNIHYDFWQSCRLWKPIIQIYHKLVHLADHGFTDPKMHKKAQKHQHYDESIWESEWA
EKPVKLVDSITYSGIIFCWLDMQQLAASYEMHCRCWFLPTFSG
>Mature_522_residues
AHPILVLGNVRSGRHSLIQALIQAKQPVEQPVALIYEPNNRTRAQFGFEGHTITFEWITNYALEPEDELEAFVQRPCVGV
IYCIEPGHDRDHWLMVPPMSQARQLVDFVKSFWQSNKAWDTLPWLWVLTKSDLASANLLAPLMAKIDPYGQPQQPICCSA
LDAHSFEPIYAWLRTIVQTCPTCIDQLQPLAEFRAHIPALPLPINWHAVPSYPKLNLAIMAIVRQALPPVWQISEYLPQL
GLHIKIEIAGMAINQAEIQPWIGEELPCYLDWTTPIEPQILEIPPPNHSIMLSLKPNQLEVIPMDVPTSLLKTIHSLGAS
RPVLALLIDQQTTNVFWVCLNDYIDKISLPAQAGQFNHSIHTTIFIPTKNRLEHNDLTIDILGFYAKRAKLLAAFSVFRE
QKARLDYLKDAELINQAQIFARMNIHYDFWQSCRLWKPIIQIYHKLVHLADHGFTDPKMHKKAQKHQHYDESIWESEWAE
KPVKLVDSITYSGIIFCWLDMQQLAASYEMHCRCWFLPTFSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60097; Mature: 59966

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHPILVLGNVRSGRHSLIQALIQAKQPVEQPVALIYEPNNRTRAQFGFEGHTITFEWIT
CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEEEE
NYALEPEDELEAFVQRPCVGVIYCIEPGHDRDHWLMVPPMSQARQLVDFVKSFWQSNKAW
CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCC
DTLPWLWVLTKSDLASANLLAPLMAKIDPYGQPQQPICCSALDAHSFEPIYAWLRTIVQT
CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH
CPTCIDQLQPLAEFRAHIPALPLPINWHAVPSYPKLNLAIMAIVRQALPPVWQISEYLPQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
LGLHIKIEIAGMAINQAEIQPWIGEELPCYLDWTTPIEPQILEIPPPNHSIMLSLKPNQL
CCCEEEEEEEEEEECHHHCCCCCCCCCCEEEECCCCCCCEEEECCCCCCEEEEEECCCCE
EVIPMDVPTSLLKTIHSLGASRPVLALLIDQQTTNVFWVCLNDYIDKISLPAQAGQFNHS
EEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEHHHHHHHCCCCCCCCCCCCC
IHTTIFIPTKNRLEHNDLTIDILGFYAKRAKLLAAFSVFREQKARLDYLKDAELINQAQI
EEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FARMNIHYDFWQSCRLWKPIIQIYHKLVHLADHGFTDPKMHKKAQKHQHYDESIWESEWA
HHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHH
EKPVKLVDSITYSGIIFCWLDMQQLAASYEMHCRCWFLPTFSG
HCHHHHHHHHHHCCEEEEEECHHHHHCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
AHPILVLGNVRSGRHSLIQALIQAKQPVEQPVALIYEPNNRTRAQFGFEGHTITFEWIT
CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEEEE
NYALEPEDELEAFVQRPCVGVIYCIEPGHDRDHWLMVPPMSQARQLVDFVKSFWQSNKAW
CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCC
DTLPWLWVLTKSDLASANLLAPLMAKIDPYGQPQQPICCSALDAHSFEPIYAWLRTIVQT
CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH
CPTCIDQLQPLAEFRAHIPALPLPINWHAVPSYPKLNLAIMAIVRQALPPVWQISEYLPQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
LGLHIKIEIAGMAINQAEIQPWIGEELPCYLDWTTPIEPQILEIPPPNHSIMLSLKPNQL
CCCEEEEEEEEEEECHHHCCCCCCCCCCEEEECCCCCCCEEEECCCCCCEEEEEECCCCE
EVIPMDVPTSLLKTIHSLGASRPVLALLIDQQTTNVFWVCLNDYIDKISLPAQAGQFNHS
EEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEHHHHHHHCCCCCCCCCCCCC
IHTTIFIPTKNRLEHNDLTIDILGFYAKRAKLLAAFSVFREQKARLDYLKDAELINQAQI
EEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FARMNIHYDFWQSCRLWKPIIQIYHKLVHLADHGFTDPKMHKKAQKHQHYDESIWESEWA
HHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHH
EKPVKLVDSITYSGIIFCWLDMQQLAASYEMHCRCWFLPTFSG
HCHHHHHHHHHHCCEEEEEECHHHHHCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA