| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898343
Identifier: 159898343
GI number: 159898343
Start: 2116902
End: 2117924
Strand: Direct
Name: 159898343
Synonym: Haur_1819
Alternate gene names: NA
Gene position: 2116902-2117924 (Clockwise)
Preceding gene: 159898342
Following gene: 159898344
Centisome position: 33.35
GC content: 49.56
Gene sequence:
>1023_bases GTGCCAAGTAAAATTGACCCTAATGATTGGGATGCAAACTTTTCGGCCAAGGGGCCGCGTCAACAAGGCCCACTCGGTGT TTTACTCCAAACCTTGTTAGTGCTTGGGATTGCTGGTGGATTAGGCTATGGGGTTTGGTTGCTTAATGAAACTATGAGTG AGCAAAATGCTGCAAATGCTGCTACGGCTACGGCAGTTGCTCCAACGATATTTGCGCGGGCCACCCAACGCTCAATCCAA GCAACCCAAGATGCGATTCCAACCGCGACCCCTAACTTGCCAATTGGGCGTTCGCTGGCAACCTCGGGGCTACGATTTGA GCCAAATGAACGCTCTCAATCCAAAGGTAATGTCAATCCAAATGATAGCCTGCAATATATCGAATCACGTGAGGTTGGTG GGGTGCTTTGGTGGAATGTGCGCTTGTTTGAACGAGCAAACATGGATTTGCCCGCAGCCGAGTTAGGTACCAGTGGTTGG GTTTTGGCTACGACTGTGACTGAACCAAGCGCACCTCCGCCGGTTGTCGCCGATTCAACCGCTGTTCCAGCTGGCCCTGT CGATTTACCAACTACGCCAATTGATCCAAGTAGCGTGATTTTAACCCGCAACGCGAACACCAATATGAGTGTTTCACACC CCCAAGCCTGGACAGAATATGTGATTGGCGAAAACCTTGCTGTTTTTTTCTCAACCGCAGTCGATGGCGAGCAAGGCATC TTGGCGAATAAAGTGATTGGTAAAAACAACGATGTAGCTGGCATTCAAGCGGCTATCGAAGAGACCATAAATATCCTAGC AGCACCCAATAGCCAACGTGAATATGCTATTAATGCGTCGGAAGGAACGGTTAAGTTTGTGCGGGTTGTGCGTGGTCAGG AGGCTAAAATTCAGGCGTTCGTTACGGTTAAGCCTGGCCCAGGTGGTAGTTTAGGCGTGATTGTCGGCTTTGTGCCCGAA TCAGGCTTTGCTGCCAACCAAGCTATTTTGCAACAAATGACCCGTAGCGCAATTATTCAATAA
Upstream 100 bases:
>100_bases CGGCTCGACGCATTCTATGCTGCCATGCTGGTTGCTATCCCAAATTTGCACTTTTAACGTATACTGGTGCGCGTGCAATT GTTCACATGGGAGGCGACCA
Downstream 100 bases:
>100_bases CCAGATTGTTGGTGGTATGGCTCAACTTGCATAGCACCAACAATCCTTGCTCTTGCCGGAGGTCATGTTAATGGACCACG AAAAAATATTGTTGCCTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MPSKIDPNDWDANFSAKGPRQQGPLGVLLQTLLVLGIAGGLGYGVWLLNETMSEQNAANAATATAVAPTIFARATQRSIQ ATQDAIPTATPNLPIGRSLATSGLRFEPNERSQSKGNVNPNDSLQYIESREVGGVLWWNVRLFERANMDLPAAELGTSGW VLATTVTEPSAPPPVVADSTAVPAGPVDLPTTPIDPSSVILTRNANTNMSVSHPQAWTEYVIGENLAVFFSTAVDGEQGI LANKVIGKNNDVAGIQAAIEETINILAAPNSQREYAINASEGTVKFVRVVRGQEAKIQAFVTVKPGPGGSLGVIVGFVPE SGFAANQAILQQMTRSAIIQ
Sequences:
>Translated_340_residues MPSKIDPNDWDANFSAKGPRQQGPLGVLLQTLLVLGIAGGLGYGVWLLNETMSEQNAANAATATAVAPTIFARATQRSIQ ATQDAIPTATPNLPIGRSLATSGLRFEPNERSQSKGNVNPNDSLQYIESREVGGVLWWNVRLFERANMDLPAAELGTSGW VLATTVTEPSAPPPVVADSTAVPAGPVDLPTTPIDPSSVILTRNANTNMSVSHPQAWTEYVIGENLAVFFSTAVDGEQGI LANKVIGKNNDVAGIQAAIEETINILAAPNSQREYAINASEGTVKFVRVVRGQEAKIQAFVTVKPGPGGSLGVIVGFVPE SGFAANQAILQQMTRSAIIQ >Mature_339_residues PSKIDPNDWDANFSAKGPRQQGPLGVLLQTLLVLGIAGGLGYGVWLLNETMSEQNAANAATATAVAPTIFARATQRSIQA TQDAIPTATPNLPIGRSLATSGLRFEPNERSQSKGNVNPNDSLQYIESREVGGVLWWNVRLFERANMDLPAAELGTSGWV LATTVTEPSAPPPVVADSTAVPAGPVDLPTTPIDPSSVILTRNANTNMSVSHPQAWTEYVIGENLAVFFSTAVDGEQGIL ANKVIGKNNDVAGIQAAIEETINILAAPNSQREYAINASEGTVKFVRVVRGQEAKIQAFVTVKPGPGGSLGVIVGFVPES GFAANQAILQQMTRSAIIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35805; Mature: 35674
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSKIDPNDWDANFSAKGPRQQGPLGVLLQTLLVLGIAGGLGYGVWLLNETMSEQNAANA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHEEEEEHHHHHHHCCCCH ATATAVAPTIFARATQRSIQATQDAIPTATPNLPIGRSLATSGLRFEPNERSQSKGNVNP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCEECCCCCCCCCCCCCC NDSLQYIESREVGGVLWWNVRLFERANMDLPAAELGTSGWVLATTVTEPSAPPPVVADST CCCHHHHHCCCCCEEEEEEEEEEEECCCCCCHHHHCCCCEEEEEEECCCCCCCCCEECCC AVPAGPVDLPTTPIDPSSVILTRNANTNMSVSHPQAWTEYVIGENLAVFFSTAVDGEQGI CCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCHHHHHHHHCCCEEEEEEECCCCCCCE LANKVIGKNNDVAGIQAAIEETINILAAPNSQREYAINASEGTVKFVRVVRGQEAKIQAF EEHHCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEEECCCCCEEEHHHHCCCCCEEEEE VTVKPGPGGSLGVIVGFVPESGFAANQAILQQMTRSAIIQ EEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure PSKIDPNDWDANFSAKGPRQQGPLGVLLQTLLVLGIAGGLGYGVWLLNETMSEQNAANA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHEEEEEHHHHHHHCCCCH ATATAVAPTIFARATQRSIQATQDAIPTATPNLPIGRSLATSGLRFEPNERSQSKGNVNP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCEECCCCCCCCCCCCCC NDSLQYIESREVGGVLWWNVRLFERANMDLPAAELGTSGWVLATTVTEPSAPPPVVADST CCCHHHHHCCCCCEEEEEEEEEEEECCCCCCHHHHCCCCEEEEEEECCCCCCCCCEECCC AVPAGPVDLPTTPIDPSSVILTRNANTNMSVSHPQAWTEYVIGENLAVFFSTAVDGEQGI CCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCHHHHHHHHCCCEEEEEEECCCCCCCE LANKVIGKNNDVAGIQAAIEETINILAAPNSQREYAINASEGTVKFVRVVRGQEAKIQAF EEHHCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEEECCCCCEEEHHHHCCCCCEEEEE VTVKPGPGGSLGVIVGFVPESGFAANQAILQQMTRSAIIQ EEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA