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The map label for this gene is dppB [H]

Identifier: 159898130

GI number: 159898130

Start: 1864545

End: 1865585

Strand: Direct

Name: dppB [H]

Synonym: Haur_1606

Alternate gene names: 159898130

Gene position: 1864545-1865585 (Clockwise)

Preceding gene: 159898129

Following gene: 159898131

Centisome position: 29.38

GC content: 49.86

Gene sequence:

>1041_bases
ATGGTTGGGTATATTTTTCGTCGGCTGCTTGGCATTATTCCCGTCCTGCTTGGCATTTCGCTCCTGGTTTTTACCCTGCT
CCGAACCATCCCCGGTGATCCGGCGATTATCATTCTCGGTGAACGCTCAACCCCCGAACAACGCGCCGCCCTGCGCACCA
AACTCAAACTTGATCGCCCCTTGTTTCTCAATTTTGAGGGCGGCAATATCTTCGAAAGCCAATATGTGACCTATATCACC
AATTTTGCTACTGGCGATTTTGGTGATTCGATCAAAACCCGCCAAGCGATTTCCAAAGAATTAAAGCAGCGTTTCCCTGC
GACGATCGAGTTAGCACTCAGTGCTTTGTTGATTGCAGTGGTGGTTGGCGTGACCACAGGTGTGGTCTCGGCTACCAAAC
GTGGCTCTTGGCTCGATGCCAGCAGTATGATTGTAGCCTTGCTCGGTGTTTCAATCCCGATCTTCTGGTTGGGTTTGATG
ATGCAATACCTCTTTTCAGTCAAACTCAAATGGCTTGACCCAAGTTTGCGGCTTGATACTAGCTTGCAAGGCTCGTTCGA
GCCAATTACGGGCCTGTATTTGCTTGATGGCCTGTTGCTTGGGCGATTTGACATTACCATGAACGCCTTTAAACATTTAA
TTATGCCCAGCCTGGCTTTGGCGACTGTACCGCTTGCTAGCATCGCCCGCATGACGCGTTCGGCCATGCTCGAAGTGCTG
TATCAAGATTACATTCGCACTGCTCGTGCCAAAGGCTTATCGGCGCGGATTACGATTTTGCGCCACGGCTTGCGCAATGC
CTTAATTCCAGTGATTACGGTAATCGGGCTGCAATTGGGCTTTTTGCTGGGCGGCGCTGTGTTGACGGAAACGGTATTTT
CATGGCCAGGAATTGGGCGCTGGCTGCTTGATGGCATTTTAGCCCGCGATTATCCGGTGGTGCAAAGCGGCGTGATGTTT
GTCTCATTGGTATTTGTGTTGATCAATACCTTGGTCGATATTTCCTACCGCTTCTTTGATCCCCGAATTCAATATAAGTA
A

Upstream 100 bases:

>100_bases
ATCATTCGCACCGATCTCAATCACGAAATAACCAATAGCCGAGCCTACGCCGCTTGTTAGCACTTAATTCTAACAAGCGG
CGTATAGTAAGGAAGAATGC

Downstream 100 bases:

>100_bases
CGCTGCTCGGCGTTTGTGGATGCAACTTGTTTGTAAAGGTTGATTATGGCGACAACAGAACCAACTATCACCAAGAAACC
AACGAGCGATCAAGCGTTAC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MVGYIFRRLLGIIPVLLGISLLVFTLLRTIPGDPAIIILGERSTPEQRAALRTKLKLDRPLFLNFEGGNIFESQYVTYIT
NFATGDFGDSIKTRQAISKELKQRFPATIELALSALLIAVVVGVTTGVVSATKRGSWLDASSMIVALLGVSIPIFWLGLM
MQYLFSVKLKWLDPSLRLDTSLQGSFEPITGLYLLDGLLLGRFDITMNAFKHLIMPSLALATVPLASIARMTRSAMLEVL
YQDYIRTARAKGLSARITILRHGLRNALIPVITVIGLQLGFLLGGAVLTETVFSWPGIGRWLLDGILARDYPVVQSGVMF
VSLVFVLINTLVDISYRFFDPRIQYK

Sequences:

>Translated_346_residues
MVGYIFRRLLGIIPVLLGISLLVFTLLRTIPGDPAIIILGERSTPEQRAALRTKLKLDRPLFLNFEGGNIFESQYVTYIT
NFATGDFGDSIKTRQAISKELKQRFPATIELALSALLIAVVVGVTTGVVSATKRGSWLDASSMIVALLGVSIPIFWLGLM
MQYLFSVKLKWLDPSLRLDTSLQGSFEPITGLYLLDGLLLGRFDITMNAFKHLIMPSLALATVPLASIARMTRSAMLEVL
YQDYIRTARAKGLSARITILRHGLRNALIPVITVIGLQLGFLLGGAVLTETVFSWPGIGRWLLDGILARDYPVVQSGVMF
VSLVFVLINTLVDISYRFFDPRIQYK
>Mature_346_residues
MVGYIFRRLLGIIPVLLGISLLVFTLLRTIPGDPAIIILGERSTPEQRAALRTKLKLDRPLFLNFEGGNIFESQYVTYIT
NFATGDFGDSIKTRQAISKELKQRFPATIELALSALLIAVVVGVTTGVVSATKRGSWLDASSMIVALLGVSIPIFWLGLM
MQYLFSVKLKWLDPSLRLDTSLQGSFEPITGLYLLDGLLLGRFDITMNAFKHLIMPSLALATVPLASIARMTRSAMLEVL
YQDYIRTARAKGLSARITILRHGLRNALIPVITVIGLQLGFLLGGAVLTETVFSWPGIGRWLLDGILARDYPVVQSGVMF
VSLVFVLINTLVDISYRFFDPRIQYK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=348, Percent_Identity=47.1264367816092, Blast_Score=311, Evalue=6e-86,
Organism=Escherichia coli, GI1787053, Length=346, Percent_Identity=39.8843930635838, Blast_Score=267, Evalue=8e-73,
Organism=Escherichia coli, GI1787761, Length=337, Percent_Identity=45.1038575667656, Blast_Score=238, Evalue=4e-64,
Organism=Escherichia coli, GI1789888, Length=347, Percent_Identity=34.8703170028818, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI1787497, Length=347, Percent_Identity=34.5821325648415, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=39.1941391941392, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1788504, Length=393, Percent_Identity=25.6997455470738, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38311; Mature: 38311

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGYIFRRLLGIIPVLLGISLLVFTLLRTIPGDPAIIILGERSTPEQRAALRTKLKLDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCC
LFLNFEGGNIFESQYVTYITNFATGDFGDSIKTRQAISKELKQRFPATIELALSALLIAV
EEEEECCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VVGVTTGVVSATKRGSWLDASSMIVALLGVSIPIFWLGLMMQYLFSVKLKWLDPSLRLDT
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SLQGSFEPITGLYLLDGLLLGRFDITMNAFKHLIMPSLALATVPLASIARMTRSAMLEVL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQDYIRTARAKGLSARITILRHGLRNALIPVITVIGLQLGFLLGGAVLTETVFSWPGIGR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
WLLDGILARDYPVVQSGVMFVSLVFVLINTLVDISYRFFDPRIQYK
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVGYIFRRLLGIIPVLLGISLLVFTLLRTIPGDPAIIILGERSTPEQRAALRTKLKLDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCC
LFLNFEGGNIFESQYVTYITNFATGDFGDSIKTRQAISKELKQRFPATIELALSALLIAV
EEEEECCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VVGVTTGVVSATKRGSWLDASSMIVALLGVSIPIFWLGLMMQYLFSVKLKWLDPSLRLDT
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SLQGSFEPITGLYLLDGLLLGRFDITMNAFKHLIMPSLALATVPLASIARMTRSAMLEVL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQDYIRTARAKGLSARITILRHGLRNALIPVITVIGLQLGFLLGGAVLTETVFSWPGIGR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
WLLDGILARDYPVVQSGVMFVSLVFVLINTLVDISYRFFDPRIQYK
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]