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The map label for this gene is yxkH [H]

Identifier: 159898119

GI number: 159898119

Start: 1848424

End: 1849956

Strand: Direct

Name: yxkH [H]

Synonym: Haur_1595

Alternate gene names: 159898119

Gene position: 1848424-1849956 (Clockwise)

Preceding gene: 159898118

Following gene: 159898121

Centisome position: 29.12

GC content: 52.12

Gene sequence:

>1533_bases
ATGGTTTTTGTGCCGTTGTTGCTGCCTCAAAGCACAGCGGCACGGATTATTTTAGCCGAAGATCGGGCCTTTGATCAGCT
TTGGCAAAATACCGATGGTCAGCGTGGCGATGAGCAATCGTGGCTGTGGGGGCCGCAGCGTTTGTGGCAAACCCAAGAGC
GCTATGCGGAAAGCCCGCGTGAATTGCGTTGGGTGCGCTACTATGCCAAAGCTCGCATGGAAATTAGTGATCCCAAGCTT
TCAGCCAAATCGCCGTGGTACATTACCAATGGTTTGTTGGTGGTTGAGTTGGTGACTGGTCGCTTGCAAATTGGCAATGC
GGCTTGGCGTGAGCAATGCACAGATGGCATTTGCGGCTCGGAGCAAGCAGTGGCAGGCGATGCAGTGGCGGCTAATCGTG
CGCCACGCTACCGCGATTGGGCTGAATTTTTGACCTTGAATGGCCAAACTGGAGCCGATTTGCGTGGTCAGCCCGTAACC
AATTGGCTAACTCACGAAGCTGAAGGCCTGCAAGTTTGGTCTGATCCAAGTTTGGCTGAGCGCTACCCCGAAACCAGTGG
CAATCATCGCGATGAAGTGACTGGTCAAACTGTGCCAGCCGTGTTGTGGGAGTATGTGCAAGCCCAAGCCCGCGAAGCGT
TATATGTCTTTGGGCGGCCTATCAGCCCAGCGTTTTGGACCCAAACCTTGGTTGATGGGATTGAGCGCGAAGTGCTGGTG
CAATTGTTTGAGCGTCGCACCTTGACCTACACGCCGAGTAATCCGCTTGGCTGGCAAGTTGAGATGGGTAATGTTGGCCA
ACATGCCTTGGAATGGCGCTATGACTTGCGACCATGGGATTATCAACCATTGCATGTGACCATGTTGACCTACCACTACA
TTTCGGCAAATCCCAATCCGGCTGATCGCTTGCGCGAAAGTTTATCGGTAGCACCAGCCGAATTTAAACGCCAGCTCGAA
TATCTACAAAACCATAATTTTCATGTGGTAAGTTTGGATCAGGTGTTGGCGGCGCAACGCGGTGAGTTGAGTTTGCCCGA
ACATCCAGTTGTCATAACGCTTGATGATGGCTATCGCGATTTGTACGAGCAGGCTTTTCCGATTGCCCAAAGCCTGAATC
TACCGATCACTGCTTATATTCCGTCGGCCTTGGTGGGTGAGCCAGCCTATGTTAGTTGGCAGCAATTGCAAGAGCTAAGC
CAATCGCCGTTAGTCACAATTGGCTCGCATACCCGCATACACGCCGATTTGGGCACGCTTGATCGTGAGTCGCAGTGGAT
TGAAATTGCTGATAGTAAACGTGAGTTGGAAGCACATTTGGGGATTGCGATTGAGCATTTTTGCTACCCCTATGGCCGCT
ACAATGCCCTGACCATGGAGCTAGTGCGCGAGGCGGGCTATCGTAGTGCTACGACTACCCGCCAAACTACCGATACTGCC
AACGATGATCCCTTGATTTGGAATCGGATCACGATTTCTGGCCGCGATTCGTTTGAGGATTTTGTGGCCAAACTCGAACG
CAGCCAAGATTAA

Upstream 100 bases:

>100_bases
CGCAAGGCCATGCTTGGGCCTTTTGGCGCGACCACATTGATCGAGAGGTTGCATGGGCTTTAGATTGGCAAAAACCCTAA
GAGTTTTGTTGGGTTTGTTG

Downstream 100 bases:

>100_bases
TTAGCATTGGCTTGGCGCAGCCATTGACGAGCGGCTTGCTCATCGCTGAAGACTTGGACTGCTTGGCTATTCCCAGTTAA
GCCAATAATCAAATTGGCAA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MVFVPLLLPQSTAARIILAEDRAFDQLWQNTDGQRGDEQSWLWGPQRLWQTQERYAESPRELRWVRYYAKARMEISDPKL
SAKSPWYITNGLLVVELVTGRLQIGNAAWREQCTDGICGSEQAVAGDAVAANRAPRYRDWAEFLTLNGQTGADLRGQPVT
NWLTHEAEGLQVWSDPSLAERYPETSGNHRDEVTGQTVPAVLWEYVQAQAREALYVFGRPISPAFWTQTLVDGIEREVLV
QLFERRTLTYTPSNPLGWQVEMGNVGQHALEWRYDLRPWDYQPLHVTMLTYHYISANPNPADRLRESLSVAPAEFKRQLE
YLQNHNFHVVSLDQVLAAQRGELSLPEHPVVITLDDGYRDLYEQAFPIAQSLNLPITAYIPSALVGEPAYVSWQQLQELS
QSPLVTIGSHTRIHADLGTLDRESQWIEIADSKRELEAHLGIAIEHFCYPYGRYNALTMELVREAGYRSATTTRQTTDTA
NDDPLIWNRITISGRDSFEDFVAKLERSQD

Sequences:

>Translated_510_residues
MVFVPLLLPQSTAARIILAEDRAFDQLWQNTDGQRGDEQSWLWGPQRLWQTQERYAESPRELRWVRYYAKARMEISDPKL
SAKSPWYITNGLLVVELVTGRLQIGNAAWREQCTDGICGSEQAVAGDAVAANRAPRYRDWAEFLTLNGQTGADLRGQPVT
NWLTHEAEGLQVWSDPSLAERYPETSGNHRDEVTGQTVPAVLWEYVQAQAREALYVFGRPISPAFWTQTLVDGIEREVLV
QLFERRTLTYTPSNPLGWQVEMGNVGQHALEWRYDLRPWDYQPLHVTMLTYHYISANPNPADRLRESLSVAPAEFKRQLE
YLQNHNFHVVSLDQVLAAQRGELSLPEHPVVITLDDGYRDLYEQAFPIAQSLNLPITAYIPSALVGEPAYVSWQQLQELS
QSPLVTIGSHTRIHADLGTLDRESQWIEIADSKRELEAHLGIAIEHFCYPYGRYNALTMELVREAGYRSATTTRQTTDTA
NDDPLIWNRITISGRDSFEDFVAKLERSQD
>Mature_510_residues
MVFVPLLLPQSTAARIILAEDRAFDQLWQNTDGQRGDEQSWLWGPQRLWQTQERYAESPRELRWVRYYAKARMEISDPKL
SAKSPWYITNGLLVVELVTGRLQIGNAAWREQCTDGICGSEQAVAGDAVAANRAPRYRDWAEFLTLNGQTGADLRGQPVT
NWLTHEAEGLQVWSDPSLAERYPETSGNHRDEVTGQTVPAVLWEYVQAQAREALYVFGRPISPAFWTQTLVDGIEREVLV
QLFERRTLTYTPSNPLGWQVEMGNVGQHALEWRYDLRPWDYQPLHVTMLTYHYISANPNPADRLRESLSVAPAEFKRQLE
YLQNHNFHVVSLDQVLAAQRGELSLPEHPVVITLDDGYRDLYEQAFPIAQSLNLPITAYIPSALVGEPAYVSWQQLQELS
QSPLVTIGSHTRIHADLGTLDRESQWIEIADSKRELEAHLGIAIEHFCYPYGRYNALTMELVREAGYRSATTTRQTTDTA
NDDPLIWNRITISGRDSFEDFVAKLERSQD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=236, Percent_Identity=25.8474576271186, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787260, Length=245, Percent_Identity=25.3061224489796, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 58255; Mature: 58255

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFVPLLLPQSTAARIILAEDRAFDQLWQNTDGQRGDEQSWLWGPQRLWQTQERYAESPR
CEEEEEECCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
ELRWVRYYAKARMEISDPKLSAKSPWYITNGLLVVELVTGRLQIGNAAWREQCTDGICGS
HHHHHHHHHHHCCEECCCCCCCCCCEEEECCEEEEEEEECCEEECCHHHHHHHCCCCCCC
EQAVAGDAVAANRAPRYRDWAEFLTLNGQTGADLRGQPVTNWLTHEAEGLQVWSDPSLAE
CCCCCCCHHHCCCCCCHHHHHHHEEECCCCCCCCCCCCCHHHHHCCCCCCEEECCCCHHH
RYPETSGNHRDEVTGQTVPAVLWEYVQAQAREALYVFGRPISPAFWTQTLVDGIEREVLV
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHH
QLFERRTLTYTPSNPLGWQVEMGNVGQHALEWRYDLRPWDYQPLHVTMLTYHYISANPNP
HHHHCCEEEECCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCEEEEEEEEEEECCCCCH
ADRLRESLSVAPAEFKRQLEYLQNHNFHVVSLDQVLAAQRGELSLPEHPVVITLDDGYRD
HHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCCEEEEECCCHHH
LYEQAFPIAQSLNLPITAYIPSALVGEPAYVSWQQLQELSQSPLVTIGSHTRIHADLGTL
HHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCC
DRESQWIEIADSKRELEAHLGIAIEHFCYPYGRYNALTMELVREAGYRSATTTRQTTDTA
CCCCCEEEECCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
NDDPLIWNRITISGRDSFEDFVAKLERSQD
CCCCEEEEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MVFVPLLLPQSTAARIILAEDRAFDQLWQNTDGQRGDEQSWLWGPQRLWQTQERYAESPR
CEEEEEECCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
ELRWVRYYAKARMEISDPKLSAKSPWYITNGLLVVELVTGRLQIGNAAWREQCTDGICGS
HHHHHHHHHHHCCEECCCCCCCCCCEEEECCEEEEEEEECCEEECCHHHHHHHCCCCCCC
EQAVAGDAVAANRAPRYRDWAEFLTLNGQTGADLRGQPVTNWLTHEAEGLQVWSDPSLAE
CCCCCCCHHHCCCCCCHHHHHHHEEECCCCCCCCCCCCCHHHHHCCCCCCEEECCCCHHH
RYPETSGNHRDEVTGQTVPAVLWEYVQAQAREALYVFGRPISPAFWTQTLVDGIEREVLV
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHH
QLFERRTLTYTPSNPLGWQVEMGNVGQHALEWRYDLRPWDYQPLHVTMLTYHYISANPNP
HHHHCCEEEECCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCEEEEEEEEEEECCCCCH
ADRLRESLSVAPAEFKRQLEYLQNHNFHVVSLDQVLAAQRGELSLPEHPVVITLDDGYRD
HHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCCEEEEECCCHHH
LYEQAFPIAQSLNLPITAYIPSALVGEPAYVSWQQLQELSQSPLVTIGSHTRIHADLGTL
HHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCC
DRESQWIEIADSKRELEAHLGIAIEHFCYPYGRYNALTMELVREAGYRSATTTRQTTDTA
CCCCCEEEECCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
NDDPLIWNRITISGRDSFEDFVAKLERSQD
CCCCEEEEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]