Click here to switch to the map view.

The map label for this gene is rhaS [H]

Identifier: 159897941

GI number: 159897941

Start: 1633084

End: 1633929

Strand: Reverse

Name: rhaS [H]

Synonym: Haur_1416

Alternate gene names: 159897941

Gene position: 1633929-1633084 (Counterclockwise)

Preceding gene: 159897942

Following gene: 159897940

Centisome position: 25.75

GC content: 45.74

Gene sequence:

>846_bases
ATGTCAAATAAACACCAGATTGAGCATATTCAACTTGAGCATAATGCCTTAGCGCCAATGTTCATCGCCAAACTAGAGCC
ACACCACATTCCCAACGTGGTTAATCTGCCACATCGCCATAGTTTTCATGAGCTGTTATGGATCAAGGCTGGCACTGGGC
GGCATTGGGTTGATCAGCAATCGTACCCATTGCAAGCCCACACTTTAGCCTTAGTGGCTCAAGGCCAAGTGCATGTTTTT
GAGCAGGCCGAGGCACTTAATGGCTATTATTTGCGCTATGATCAGGCTTTTCTGCCCAACCAATCTGATGAGCAGCAACC
AAGCTTTCGAGCCAATGGCGGGCTACAACTGAGTGCTGCCGATAGCAAAATTATTGATAGTTTATTTGAATTATTGGCCC
ACGAATATCAACGTGAAGATTGTTTAGCCAAATACCACAGCCTACGCCATTTGCTGCTGACCCTACTTTGGCAAAGCCAA
CGGCTGAGCCAAGCAGCCGATCAACCACCACAATCAGCCAATTATGCCATCTATCGCCAATTTTTGGCGCTGCTCGAACA
AGCATTTCAGCAGCATCACGACATTCACTATTATGCCGATCAGCTTAATCTGAGCAAAACACAATTGGCTCAAATTATTA
GCCAGCACAGTGGCCAACCACCAAAACGCATCATTCTCAAACGAATTTTGCTCGAAGCACAACGTTATTTGCAATTCACC
ACCATGCCAATTCAACAATTAGCCCAAAGCCTCGGCTTTCATGATCCCTTCCATTTCAGCAAATTTTTCAAGCAAGAGCT
AGGCATTTCGCCGCGCCGTTATCGCGAACAAAGCTTCAAAAAATGA

Upstream 100 bases:

>100_bases
TGAAATTGTCCAAGCAATTCTGACCGCAATTCGTAGTTATACCCACAACATCGAACCGCACGACGATATTACCTTGGTCG
TGGTGGCTGTTCAATAAATT

Downstream 100 bases:

>100_bases
TATGTTCTGTTCAAAATTTTTCCATTTCTTCGATCTCCCATAATCGCTACAATAAAGCGATGGCTTGCATTCCAGCAGAT
ACGAGCCAGCAACGAATTAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSNKHQIEHIQLEHNALAPMFIAKLEPHHIPNVVNLPHRHSFHELLWIKAGTGRHWVDQQSYPLQAHTLALVAQGQVHVF
EQAEALNGYYLRYDQAFLPNQSDEQQPSFRANGGLQLSAADSKIIDSLFELLAHEYQREDCLAKYHSLRHLLLTLLWQSQ
RLSQAADQPPQSANYAIYRQFLALLEQAFQQHHDIHYYADQLNLSKTQLAQIISQHSGQPPKRIILKRILLEAQRYLQFT
TMPIQQLAQSLGFHDPFHFSKFFKQELGISPRRYREQSFKK

Sequences:

>Translated_281_residues
MSNKHQIEHIQLEHNALAPMFIAKLEPHHIPNVVNLPHRHSFHELLWIKAGTGRHWVDQQSYPLQAHTLALVAQGQVHVF
EQAEALNGYYLRYDQAFLPNQSDEQQPSFRANGGLQLSAADSKIIDSLFELLAHEYQREDCLAKYHSLRHLLLTLLWQSQ
RLSQAADQPPQSANYAIYRQFLALLEQAFQQHHDIHYYADQLNLSKTQLAQIISQHSGQPPKRIILKRILLEAQRYLQFT
TMPIQQLAQSLGFHDPFHFSKFFKQELGISPRRYREQSFKK
>Mature_280_residues
SNKHQIEHIQLEHNALAPMFIAKLEPHHIPNVVNLPHRHSFHELLWIKAGTGRHWVDQQSYPLQAHTLALVAQGQVHVFE
QAEALNGYYLRYDQAFLPNQSDEQQPSFRANGGLQLSAADSKIIDSLFELLAHEYQREDCLAKYHSLRHLLLTLLWQSQR
LSQAADQPPQSANYAIYRQFLALLEQAFQQHHDIHYYADQLNLSKTQLAQIISQHSGQPPKRIILKRILLEAQRYLQFTT
MPIQQLAQSLGFHDPFHFSKFFKQELGISPRRYREQSFKK

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=253, Percent_Identity=28.0632411067194, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32794; Mature: 32663

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKHQIEHIQLEHNALAPMFIAKLEPHHIPNVVNLPHRHSFHELLWIKAGTGRHWVDQQ
CCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCC
SYPLQAHTLALVAQGQVHVFEQAEALNGYYLRYDQAFLPNQSDEQQPSFRANGGLQLSAA
CCCCHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECC
DSKIIDSLFELLAHEYQREDCLAKYHSLRHLLLTLLWQSQRLSQAADQPPQSANYAIYRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FLALLEQAFQQHHDIHYYADQLNLSKTQLAQIISQHSGQPPKRIILKRILLEAQRYLQFT
HHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TMPIQQLAQSLGFHDPFHFSKFFKQELGISPRRYREQSFKK
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure 
SNKHQIEHIQLEHNALAPMFIAKLEPHHIPNVVNLPHRHSFHELLWIKAGTGRHWVDQQ
CCCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCC
SYPLQAHTLALVAQGQVHVFEQAEALNGYYLRYDQAFLPNQSDEQQPSFRANGGLQLSAA
CCCCHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECC
DSKIIDSLFELLAHEYQREDCLAKYHSLRHLLLTLLWQSQRLSQAADQPPQSANYAIYRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FLALLEQAFQQHHDIHYYADQLNLSKTQLAQIISQHSGQPPKRIILKRILLEAQRYLQFT
HHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TMPIQQLAQSLGFHDPFHFSKFFKQELGISPRRYREQSFKK
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA