Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159897877

Identifier: 159897877

GI number: 159897877

Start: 1566147

End: 1567085

Strand: Reverse

Name: 159897877

Synonym: Haur_1351

Alternate gene names: NA

Gene position: 1567085-1566147 (Counterclockwise)

Preceding gene: 159897878

Following gene: 159897876

Centisome position: 24.69

GC content: 55.8

Gene sequence:

>939_bases
ATGGCTTCATCGCTCGCTATTGGCCTCAATCCCATCGAGTTGCACATCCTGTTGCTCGTTGCTCGGCTTGGGCGTTTGCT
GTCTCGCCACCTGCGTACCGCGTGGGGTCATCCGTTTACCGTGACGATTCAGACGGTTAATCGCACGTTGTCCAAGCTCG
TCGATGCCAAGCTGCTCACCTATTGCGAACACTTTCAATCGCATGGCTATGACCCGCGTGGTGCGCTGGGCTGGACACGC
CATGGCCGTTTGTATAGTCTCACGCCGCTCGGCTGGGAGATCGTCAAACAGGCATTTCCGATGCTCGAAGAAGGCAGTGA
GCGGCTGGCTCCCACCATGGTCAATCTCCAGCATCAAGCTGAACACCAGATTGAATATGCCGAGGTCATCACTAGCTTGA
TTCAGTCCTTGCCGTATGTGCCTGGCATTGTGGGAATGAGTAGTTATATTGAGATGGACTTAGGCCCAACCGCACGGCCA
CGCGCCGATGGCATCGTCGTGGTGCGCCGCTGGGCCGATGCAACGCAGCCCGACTGTGAGCGCTCGTCACTCTATCCGTG
GCTGGGGATTGGTCAACAATCAAAGCAAATTGATCAACTCTATGCGATTGAAATTGATCGCGGAACTGAGGAATTGAGTA
TTATCACGGGGAAGGCGCATTCGTATGGGGAGTTGTATCGCTCGAAGTATTGGGAAGGGCGCTACAACTGGCCGCTGATT
GCCTTTACCGTGCCGAGCGAACGCCGCAAACGGGCGGTGCTCGATGCGTGGGAAATCGGCTGGCCTGGCAGTCAATTGCT
GATTACGACGATCGACGAGGTGCGTGAGTCGGGTATTCTCACGCCGATCTGGACAGCCCAGTACACCAAGCAAGGCCAAC
GCATGCAGCAGCCGCATCGCTTTTTACGGGCAGCGTGGTTTGAGAAGATCATCGCATAA

Upstream 100 bases:

>100_bases
AAAGAATAGCCCATCAGAATGGCCTAAACTGGCCGTTTGGTCGTGCCGACATTCTTTAACAGGCTGGATAGCCACCATTT
TCATCCTGAGGAGGTTGTTC

Downstream 100 bases:

>100_bases
GGAATGGAGCAACTGCAGCTACCAGACATGCTATCCACCAATACATCATGCTGCTATACTTTTGATTGCCAATAGTCTGA
ATAGGAGCGAGGAGCATCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MASSLAIGLNPIELHILLLVARLGRLLSRHLRTAWGHPFTVTIQTVNRTLSKLVDAKLLTYCEHFQSHGYDPRGALGWTR
HGRLYSLTPLGWEIVKQAFPMLEEGSERLAPTMVNLQHQAEHQIEYAEVITSLIQSLPYVPGIVGMSSYIEMDLGPTARP
RADGIVVVRRWADATQPDCERSSLYPWLGIGQQSKQIDQLYAIEIDRGTEELSIITGKAHSYGELYRSKYWEGRYNWPLI
AFTVPSERRKRAVLDAWEIGWPGSQLLITTIDEVRESGILTPIWTAQYTKQGQRMQQPHRFLRAAWFEKIIA

Sequences:

>Translated_312_residues
MASSLAIGLNPIELHILLLVARLGRLLSRHLRTAWGHPFTVTIQTVNRTLSKLVDAKLLTYCEHFQSHGYDPRGALGWTR
HGRLYSLTPLGWEIVKQAFPMLEEGSERLAPTMVNLQHQAEHQIEYAEVITSLIQSLPYVPGIVGMSSYIEMDLGPTARP
RADGIVVVRRWADATQPDCERSSLYPWLGIGQQSKQIDQLYAIEIDRGTEELSIITGKAHSYGELYRSKYWEGRYNWPLI
AFTVPSERRKRAVLDAWEIGWPGSQLLITTIDEVRESGILTPIWTAQYTKQGQRMQQPHRFLRAAWFEKIIA
>Mature_311_residues
ASSLAIGLNPIELHILLLVARLGRLLSRHLRTAWGHPFTVTIQTVNRTLSKLVDAKLLTYCEHFQSHGYDPRGALGWTRH
GRLYSLTPLGWEIVKQAFPMLEEGSERLAPTMVNLQHQAEHQIEYAEVITSLIQSLPYVPGIVGMSSYIEMDLGPTARPR
ADGIVVVRRWADATQPDCERSSLYPWLGIGQQSKQIDQLYAIEIDRGTEELSIITGKAHSYGELYRSKYWEGRYNWPLIA
FTVPSERRKRAVLDAWEIGWPGSQLLITTIDEVRESGILTPIWTAQYTKQGQRMQQPHRFLRAAWFEKIIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35601; Mature: 35470

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSLAIGLNPIELHILLLVARLGRLLSRHLRTAWGHPFTVTIQTVNRTLSKLVDAKLLT
CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHH
YCEHFQSHGYDPRGALGWTRHGRLYSLTPLGWEIVKQAFPMLEEGSERLAPTMVNLQHQA
HHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EHQIEYAEVITSLIQSLPYVPGIVGMSSYIEMDLGPTARPRADGIVVVRRWADATQPDCE
HHHHHHHHHHHHHHHHCCCCCCHHCHHHHEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
RSSLYPWLGIGQQSKQIDQLYAIEIDRGTEELSIITGKAHSYGELYRSKYWEGRYNWPLI
HHCCCCCCCCCCCHHHHHHEEEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEE
AFTVPSERRKRAVLDAWEIGWPGSQLLITTIDEVRESGILTPIWTAQYTKQGQRMQQPHR
EEECCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCEEHHHHHHHHHHHHHHHHH
FLRAAWFEKIIA
HHHHHHHHHHCC
>Mature Secondary Structure 
ASSLAIGLNPIELHILLLVARLGRLLSRHLRTAWGHPFTVTIQTVNRTLSKLVDAKLLT
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHH
YCEHFQSHGYDPRGALGWTRHGRLYSLTPLGWEIVKQAFPMLEEGSERLAPTMVNLQHQA
HHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EHQIEYAEVITSLIQSLPYVPGIVGMSSYIEMDLGPTARPRADGIVVVRRWADATQPDCE
HHHHHHHHHHHHHHHHCCCCCCHHCHHHHEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
RSSLYPWLGIGQQSKQIDQLYAIEIDRGTEELSIITGKAHSYGELYRSKYWEGRYNWPLI
HHCCCCCCCCCCCHHHHHHEEEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEE
AFTVPSERRKRAVLDAWEIGWPGSQLLITTIDEVRESGILTPIWTAQYTKQGQRMQQPHR
EEECCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCEEHHHHHHHHHHHHHHHHH
FLRAAWFEKIIA
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA