| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159897856
Identifier: 159897856
GI number: 159897856
Start: 1541244
End: 1541804
Strand: Reverse
Name: 159897856
Synonym: Haur_1330
Alternate gene names: NA
Gene position: 1541804-1541244 (Counterclockwise)
Preceding gene: 159897857
Following gene: 159897855
Centisome position: 24.29
GC content: 55.26
Gene sequence:
>561_bases ATGAGCCTTTTCCGATTCGCCCAGTCGCGCATCTTCACCACGCCTGATCTCTCGATCGTGGATTTTCCAGCAGCCCCAAC CCACTTCACGGTTGGACGAGCTGGCTATCAACCGCTGCAAATTCTGCTGCACCACACAGGCGGCACGAATAGTTTGCTGT GGCTGACTCGCACGAGCAACCCGCGTGTGAGTGCCCATCGGCTGATTAGTAAGTCGGGCATGAATCACAAACTGGTTAAG GATGAAGACACCGCCTATTGCGCCGGATTCGGCACGATTGGCCCTGTCGATCCTGATGGCAGTGACCCAGTGGGCGTTCC GCGCAACTTGAATGAATGCACGCTCAATATTGAAATCGAAAATCGTGGCAATGGGGTTGATCCTTATCCGCTACCGCAAA TGACCATGGTTGCGTGGCAGATTCGCGAGTGGTGGGGCAAGTATGGGTTTCTGCCTGTGCTTGGCCACGGCCATGTCGAT GCACGAAAAGACGATCCGGCTGGGTTCAACTGGGCTTTGTTACATGGGCTACTGCGTGATGGCCTGAAAGCCGTGCTGTG A
Upstream 100 bases:
>100_bases AGCGGGTTATGTCGGTCTTGGCTGAGCAAGCGAAGGACAATAGCCAGCGCCCCGATCTCCTCGAACAAGGCCTGGAGCGA ATTGAAAAGGATGGTCATCT
Downstream 100 bases:
>100_bases TTTGGGTGGCGTTGGGCTCAGTGTTGTCTATGGCTTTTTGTTCTATATCAATCTGGATCTGTGGTGCTTTTTTCGTGACC TTGATCAAGATCTAACCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 186; Mature: 185
Protein sequence:
>186_residues MSLFRFAQSRIFTTPDLSIVDFPAAPTHFTVGRAGYQPLQILLHHTGGTNSLLWLTRTSNPRVSAHRLISKSGMNHKLVK DEDTAYCAGFGTIGPVDPDGSDPVGVPRNLNECTLNIEIENRGNGVDPYPLPQMTMVAWQIREWWGKYGFLPVLGHGHVD ARKDDPAGFNWALLHGLLRDGLKAVL
Sequences:
>Translated_186_residues MSLFRFAQSRIFTTPDLSIVDFPAAPTHFTVGRAGYQPLQILLHHTGGTNSLLWLTRTSNPRVSAHRLISKSGMNHKLVK DEDTAYCAGFGTIGPVDPDGSDPVGVPRNLNECTLNIEIENRGNGVDPYPLPQMTMVAWQIREWWGKYGFLPVLGHGHVD ARKDDPAGFNWALLHGLLRDGLKAVL >Mature_185_residues SLFRFAQSRIFTTPDLSIVDFPAAPTHFTVGRAGYQPLQILLHHTGGTNSLLWLTRTSNPRVSAHRLISKSGMNHKLVKD EDTAYCAGFGTIGPVDPDGSDPVGVPRNLNECTLNIEIENRGNGVDPYPLPQMTMVAWQIREWWGKYGFLPVLGHGHVDA RKDDPAGFNWALLHGLLRDGLKAVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20554; Mature: 20422
Theoretical pI: Translated: 7.74; Mature: 7.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFRFAQSRIFTTPDLSIVDFPAAPTHFTVGRAGYQPLQILLHHTGGTNSLLWLTRTSN CCHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCEEEEEEECCC PRVSAHRLISKSGMNHKLVKDEDTAYCAGFGTIGPVDPDGSDPVGVPRNLNECTLNIEIE CCHHHHHHHHHCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC NRGNGVDPYPLPQMTMVAWQIREWWGKYGFLPVLGHGHVDARKDDPAGFNWALLHGLLRD CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHH GLKAVL HHHHCC >Mature Secondary Structure SLFRFAQSRIFTTPDLSIVDFPAAPTHFTVGRAGYQPLQILLHHTGGTNSLLWLTRTSN CHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCEEEEEEECCC PRVSAHRLISKSGMNHKLVKDEDTAYCAGFGTIGPVDPDGSDPVGVPRNLNECTLNIEIE CCHHHHHHHHHCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC NRGNGVDPYPLPQMTMVAWQIREWWGKYGFLPVLGHGHVDARKDDPAGFNWALLHGLLRD CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHH GLKAVL HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA