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The map label for this gene is radC [C]

Identifier: 159897836

GI number: 159897836

Start: 1517896

End: 1518591

Strand: Reverse

Name: radC [C]

Synonym: Haur_1307

Alternate gene names: 159897836

Gene position: 1518591-1517896 (Counterclockwise)

Preceding gene: 159897840

Following gene: 159897826

Centisome position: 23.93

GC content: 51.72

Gene sequence:

>696_bases
ATGAGCAACTATTTTATTTCAGTTAAAGAATTACCTACCAGCGAACAGCCGCGTGAACGCCTGCGCGACTTTGGGCCACA
AGCGCTGTCTGATGCTGAGATTTTGGCGATTTTGCTACGGGTTGGCGTGCAAGGAATGAATGTGATTCAGCTAGCCCAAT
TATTGCTGCGCGAGCATGGCGGCTGGCATGGCCTGCAAAAAATCGAATTCAACGATTTATGTCGAGTACGTGGCATGGGC
GAGGCCAAGGCTGCGCATATCAAAGCAGCTCTTGAAATTGGGCGGCGCTTGTTGCTGGCAGCGCCCAATCAGCCCTTGCA
AATCACCTCGCCAGCCGATGTGGTGGGATTATTGCAAGTTGAAATGAGCCATCTGGATAAGGAGCATCTGCGGGTAGTGA
TTCTCAACACCAAAAACCATGTGCTCAAAATTGAAAACGTGACAATTGGCTCGTTAAATAGCGCTAGCGTGCGGATTGCC
GAGGTCTTTCGTGAGCCAATTCGCCTGAATGCGGCGGCAATTATTGTGGTGCATAATCACCCGAGCGGCGACCCAACGCC
CTCGCCCGACGATATTTTGGTCACCAAGCAACTGATTCAGGCTGGCCAACTGCTCGATATCGACGTGCTTGACCATTTGG
TGATCGGTCAAGCACGTTGGGTCAGCATGCGCGAACGGCGGTTGGCATGGTTATAA

Upstream 100 bases:

>100_bases
ACACCTTTTTGGCAATTTCGCCAAATGCCTAAATATCCATGCCAAATTTGCCACCGTTGTGGCTCTACTCTAACAACCAT
TTTAGTGCGAGTTTAAGCAT

Downstream 100 bases:

>100_bases
GGCTATTCCGCCGAATTCAAATTCGATAACGTATGGCCCATGCGTTCGCGCTTGGTGCGCAGATAGGCTTGGTTTTCAGT
GTTAGGGTCGGTTTCCAAGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSNYFISVKELPTSEQPRERLRDFGPQALSDAEILAILLRVGVQGMNVIQLAQLLLREHGGWHGLQKIEFNDLCRVRGMG
EAKAAHIKAALEIGRRLLLAAPNQPLQITSPADVVGLLQVEMSHLDKEHLRVVILNTKNHVLKIENVTIGSLNSASVRIA
EVFREPIRLNAAAIIVVHNHPSGDPTPSPDDILVTKQLIQAGQLLDIDVLDHLVIGQARWVSMRERRLAWL

Sequences:

>Translated_231_residues
MSNYFISVKELPTSEQPRERLRDFGPQALSDAEILAILLRVGVQGMNVIQLAQLLLREHGGWHGLQKIEFNDLCRVRGMG
EAKAAHIKAALEIGRRLLLAAPNQPLQITSPADVVGLLQVEMSHLDKEHLRVVILNTKNHVLKIENVTIGSLNSASVRIA
EVFREPIRLNAAAIIVVHNHPSGDPTPSPDDILVTKQLIQAGQLLDIDVLDHLVIGQARWVSMRERRLAWL
>Mature_230_residues
SNYFISVKELPTSEQPRERLRDFGPQALSDAEILAILLRVGVQGMNVIQLAQLLLREHGGWHGLQKIEFNDLCRVRGMGE
AKAAHIKAALEIGRRLLLAAPNQPLQITSPADVVGLLQVEMSHLDKEHLRVVILNTKNHVLKIENVTIGSLNSASVRIAE
VFREPIRLNAAAIIVVHNHPSGDPTPSPDDILVTKQLIQAGQLLDIDVLDHLVIGQARWVSMRERRLAWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=215, Percent_Identity=36.7441860465116, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1788997, Length=121, Percent_Identity=39.6694214876033, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI2367100, Length=118, Percent_Identity=38.9830508474576, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788312, Length=111, Percent_Identity=40.5405405405405, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25690; Mature: 25559

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYFISVKELPTSEQPRERLRDFGPQALSDAEILAILLRVGVQGMNVIQLAQLLLREHG
CCCEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
GWHGLQKIEFNDLCRVRGMGEAKAAHIKAALEIGRRLLLAAPNQPLQITSPADVVGLLQV
CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHHHHHH
EMSHLDKEHLRVVILNTKNHVLKIENVTIGSLNSASVRIAEVFREPIRLNAAAIIVVHNH
HHHHCCCCCEEEEEEECCCCEEEEECEEECCCCCCHHHHHHHHHHHHEECEEEEEEEECC
PSGDPTPSPDDILVTKQLIQAGQLLDIDVLDHLVIGQARWVSMRERRLAWL
CCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNYFISVKELPTSEQPRERLRDFGPQALSDAEILAILLRVGVQGMNVIQLAQLLLREHG
CCEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
GWHGLQKIEFNDLCRVRGMGEAKAAHIKAALEIGRRLLLAAPNQPLQITSPADVVGLLQV
CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHHHHHH
EMSHLDKEHLRVVILNTKNHVLKIENVTIGSLNSASVRIAEVFREPIRLNAAAIIVVHNH
HHHHCCCCCEEEEEEECCCCEEEEECEEECCCCCCHHHHHHHHHHHHEECEEEEEEEECC
PSGDPTPSPDDILVTKQLIQAGQLLDIDVLDHLVIGQARWVSMRERRLAWL
CCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA