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The map label for this gene is xylA [H]

Identifier: 159897776

GI number: 159897776

Start: 1455013

End: 1456161

Strand: Direct

Name: xylA [H]

Synonym: Haur_1247

Alternate gene names: 159897776

Gene position: 1455013-1456161 (Clockwise)

Preceding gene: 159897775

Following gene: 159897777

Centisome position: 22.93

GC content: 49.7

Gene sequence:

>1149_bases
ATGACACAGCATAAATTTAGCTTTGGATTATGGACAGTTGGCAATGTTGGGCGTGACCCATTTGGTGAACCAGTGCGCAA
AACCCTCTCGCCAGTTGAGATTGTGCATTTGTTGGCTGAAGTTGGAGCATGGGGCGTAAATTTTCACGATAACGATTTAG
TGCCGATTGATGCTAGTGCCAGCCAAAAAGCCCAAATTATTGCCGATTTCAAACAAGCACTCAAGGATACCGGCTTGGTT
GTGCCGATGGCAACCACCAATTTATTCGGTCACCCAGCCTTTAAAGATGGCGCATTTACCAGCAACGATCCGGCTGTGCG
GGCTTATGCCTTGCAAAAAACCATGGCAGCCATGGATTTGGGCGCTGAATTTGGCGCGAAAACCTATGTGTTTTGGGGTG
GCCGTGAAGGCAGCGAAACCGATGCCTCGAAAAATCTGCTCGAAGGCTTGAAGTGGTTCCGCGAAGCGCTCAACTTCTTG
TGCGACTATAGCAATGCCCAAGGCTATGGCTATCGTTTTGCCTTGGAAGCCAAGCCCAACGAACCACGCGGCGATATCTT
CTTGCCTACCACCGGAGCCATGTTGGGCTTTATTCAGACCCTCGATCAGCCCGAGATGGTGGGGGTAAATCCCGAAGTTG
CCCATGAAACCATGGCAGGCTTGAATTTTACCCATGCCGTGGCCCAAGCGCTTGATGCTGGCAAACTGTTCCATATCGAC
CTCAACGATCAAAATAGTGGTCGCTACGACCAAGATTATCGCTTTGGAGCACAAAACTACAAACAAAGCTTTTTCTTGGT
GAAATTGCTGCAAGATGCTGGCTACGATGGCCCATTGCACTTCGATGCTCACGCTTACCGCAGCGAAGATCTTGAGGGAG
TTAAAGATTTTGCCCGTGGTTGTATGCGTACCTACCAAATTTTGGCCGAAAAAGTTCAGCGCTTCAATGCTGATGCTGAA
ATTCAAGCCTTGTTAGCTCAAATCAACGCCCCAAATGCCGATGTTGAGCAATTCCGTGGTGGCTACACGCCAGAACGTGC
CGCTGCGCTCAAAGCCTATCAATTTGATCGTCAAGCACTTGGCGAACGCGGCCTCGGCTACGAAAAGCTTGATCAACTAA
CCTTCGAGTTGTTGATGGGAGCCAGATAG

Upstream 100 bases:

>100_bases
TCGATTTTAGGGGGTGCAGGGAGATTAAAGCCCCCTGCGTCTCCCTCCAGCGGAGGGACGGAAGGGTGGAGAATCATGGA
TTAACATAAGGAATTAAATC

Downstream 100 bases:

>100_bases
AAAGGCAAAAGGCAGAAGTCAAAAGGCAAAAATATCTGTCAATAATCAGCTTTGTGCTCTTCATGGGTTCAAATTATTGA
TCCACGAAGAGCACGAAGGC

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MTQHKFSFGLWTVGNVGRDPFGEPVRKTLSPVEIVHLLAEVGAWGVNFHDNDLVPIDASASQKAQIIADFKQALKDTGLV
VPMATTNLFGHPAFKDGAFTSNDPAVRAYALQKTMAAMDLGAEFGAKTYVFWGGREGSETDASKNLLEGLKWFREALNFL
CDYSNAQGYGYRFALEAKPNEPRGDIFLPTTGAMLGFIQTLDQPEMVGVNPEVAHETMAGLNFTHAVAQALDAGKLFHID
LNDQNSGRYDQDYRFGAQNYKQSFFLVKLLQDAGYDGPLHFDAHAYRSEDLEGVKDFARGCMRTYQILAEKVQRFNADAE
IQALLAQINAPNADVEQFRGGYTPERAAALKAYQFDRQALGERGLGYEKLDQLTFELLMGAR

Sequences:

>Translated_382_residues
MTQHKFSFGLWTVGNVGRDPFGEPVRKTLSPVEIVHLLAEVGAWGVNFHDNDLVPIDASASQKAQIIADFKQALKDTGLV
VPMATTNLFGHPAFKDGAFTSNDPAVRAYALQKTMAAMDLGAEFGAKTYVFWGGREGSETDASKNLLEGLKWFREALNFL
CDYSNAQGYGYRFALEAKPNEPRGDIFLPTTGAMLGFIQTLDQPEMVGVNPEVAHETMAGLNFTHAVAQALDAGKLFHID
LNDQNSGRYDQDYRFGAQNYKQSFFLVKLLQDAGYDGPLHFDAHAYRSEDLEGVKDFARGCMRTYQILAEKVQRFNADAE
IQALLAQINAPNADVEQFRGGYTPERAAALKAYQFDRQALGERGLGYEKLDQLTFELLMGAR
>Mature_381_residues
TQHKFSFGLWTVGNVGRDPFGEPVRKTLSPVEIVHLLAEVGAWGVNFHDNDLVPIDASASQKAQIIADFKQALKDTGLVV
PMATTNLFGHPAFKDGAFTSNDPAVRAYALQKTMAAMDLGAEFGAKTYVFWGGREGSETDASKNLLEGLKWFREALNFLC
DYSNAQGYGYRFALEAKPNEPRGDIFLPTTGAMLGFIQTLDQPEMVGVNPEVAHETMAGLNFTHAVAQALDAGKLFHIDL
NDQNSGRYDQDYRFGAQNYKQSFFLVKLLQDAGYDGPLHFDAHAYRSEDLEGVKDFARGCMRTYQILAEKVQRFNADAEI
QALLAQINAPNADVEQFRGGYTPERAAALKAYQFDRQALGERGLGYEKLDQLTFELLMGAR

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=288, Percent_Identity=27.4305555555556, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013453
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 42307; Mature: 42176

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQHKFSFGLWTVGNVGRDPFGEPVRKTLSPVEIVHLLAEVGAWGVNFHDNDLVPIDASA
CCCCEEEECEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCC
SQKAQIIADFKQALKDTGLVVPMATTNLFGHPAFKDGAFTSNDPAVRAYALQKTMAAMDL
CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GAEFGAKTYVFWGGREGSETDASKNLLEGLKWFREALNFLCDYSNAQGYGYRFALEAKPN
HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
EPRGDIFLPTTGAMLGFIQTLDQPEMVGVNPEVAHETMAGLNFTHAVAQALDAGKLFHID
CCCCCEEECCHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEEE
LNDQNSGRYDQDYRFGAQNYKQSFFLVKLLQDAGYDGPLHFDAHAYRSEDLEGVKDFARG
CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCHHHHCCCHHHHHHHHHHH
CMRTYQILAEKVQRFNADAEIQALLAQINAPNADVEQFRGGYTPERAAALKAYQFDRQAL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
GERGLGYEKLDQLTFELLMGAR
HCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQHKFSFGLWTVGNVGRDPFGEPVRKTLSPVEIVHLLAEVGAWGVNFHDNDLVPIDASA
CCCEEEECEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCC
SQKAQIIADFKQALKDTGLVVPMATTNLFGHPAFKDGAFTSNDPAVRAYALQKTMAAMDL
CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GAEFGAKTYVFWGGREGSETDASKNLLEGLKWFREALNFLCDYSNAQGYGYRFALEAKPN
HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
EPRGDIFLPTTGAMLGFIQTLDQPEMVGVNPEVAHETMAGLNFTHAVAQALDAGKLFHID
CCCCCEEECCHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEEE
LNDQNSGRYDQDYRFGAQNYKQSFFLVKLLQDAGYDGPLHFDAHAYRSEDLEGVKDFARG
CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCHHHHCCCHHHHHHHHHHH
CMRTYQILAEKVQRFNADAEIQALLAQINAPNADVEQFRGGYTPERAAALKAYQFDRQAL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
GERGLGYEKLDQLTFELLMGAR
HCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10089429; 10329168 [H]