| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897404
Identifier: 159897404
GI number: 159897404
Start: 996060
End: 997244
Strand: Direct
Name: 159897404
Synonym: Haur_0875
Alternate gene names: NA
Gene position: 996060-997244 (Clockwise)
Preceding gene: 159897403
Following gene: 159897405
Centisome position: 15.69
GC content: 49.79
Gene sequence:
>1185_bases ATGACCTCAAGTGCAACTGAAAAAGCCTTGTTAGAACCAGCCGACGATGTTCCAGTGATCCGAGGATTGCCGAATATCCA AACAAACCAGTACACAATCTCCGTCCTTACTGCCGATGCCTCTTCAAAAGCTTTAACCACGATTCAAAAACAAATTGTTT CGGCGATCCATGTGCATAGTTTGACCCAACTCCCAGCGTTGCATAAGGTTGTCGATACCATGTTTATTGTAACGGCCCAT GCCCCGACGACCCTTAAGCGCGGCGATGTATTGGCCGTCGATCAACGTTCTAATCGGATTTCGCTGCTCCGTGATGGCCA AAGCCGCCCATATTTAGATATTTCTAGCGCCTATCAGGCACATCTTTGGGATGTCGCGGTCAATTCAGATCGCAGTCGGG TGTATGTTTCGATGAGTGGTATGCGTGGCCCTACGGCCTCACACGTTGGGGTTGCCGGAACCAGCGCCGTTCTTGAGATT GATGCTCAAAGCGGCAATTTGCTGCGAGCTTTTACGGCCTATGATGAGGTCTCAGGCCTGCCTTACCAAGATCAGATGCT TGATTTGGCTGGTTTAGTGATCACTCCTGATGATACACAAGTGCTTGCCTGCGATTTTAACAATTGGCAAGGCAATGGCA AGGTCATCGCGATCAATCTTCAGACTGGCACGATTTCAGTGCTTGCCGATGAGCTTGATCAGCCCTCGACGCTAAGTGTT GATGGCCCAGATCATGTGTTGGTTGCGAATACCCGTCAACCGCATGGCAAAGCTAGTGGCGGCCAGATTATTCGGATCAA TACCCGAACTGGCACAAAAGAGATCGTTGGCGAAATCTCGGGGGTTGATGCCTCGCTGGTTGGAGTTGTACGGCTACCTG ATGGTTCATTCGCAGGCACGATGAGCGAAGGCACCCAAGAAAAATGTATGGTTTTTCATATGGAGGCCGGCAGCAGCCAG CATCGGATTATCTGGCATCCTCAGCCTGGCTTTCTTGGCTCGGGAATTTCAGTTCAGGACGATACATTATGGGTTGCTGA AACGCTGCGTGGACGAGCGTACCAGCTTGATTTTAACGGCAATATTAAGCAATTTGTTCAAGTATACGCCGGAGTTGACC AAGATAACCTTGAGTTTATGTTCCGCGGCTTTGATACGCTCGAGAGCGTTCAAGTTGTGGCCTAA
Upstream 100 bases:
>100_bases CCCAATGCAGCCAACTGATCCGCCCCTTCTTAGCGCATTGTTTTATTTTATGGTACTTGCTCAGCAACAGCTTGAGCTTT TTGTCCAAAGGAGTTAGTCC
Downstream 100 bases:
>100_bases GTCTGTGCCTATGAAGCCTTGCATGGGCGGTTTGGGAGGATTTGATCATGGCTGATTCTCAGTCGGTACCACCAATTGAA CTTGTGACCTATATCAATGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MTSSATEKALLEPADDVPVIRGLPNIQTNQYTISVLTADASSKALTTIQKQIVSAIHVHSLTQLPALHKVVDTMFIVTAH APTTLKRGDVLAVDQRSNRISLLRDGQSRPYLDISSAYQAHLWDVAVNSDRSRVYVSMSGMRGPTASHVGVAGTSAVLEI DAQSGNLLRAFTAYDEVSGLPYQDQMLDLAGLVITPDDTQVLACDFNNWQGNGKVIAINLQTGTISVLADELDQPSTLSV DGPDHVLVANTRQPHGKASGGQIIRINTRTGTKEIVGEISGVDASLVGVVRLPDGSFAGTMSEGTQEKCMVFHMEAGSSQ HRIIWHPQPGFLGSGISVQDDTLWVAETLRGRAYQLDFNGNIKQFVQVYAGVDQDNLEFMFRGFDTLESVQVVA
Sequences:
>Translated_394_residues MTSSATEKALLEPADDVPVIRGLPNIQTNQYTISVLTADASSKALTTIQKQIVSAIHVHSLTQLPALHKVVDTMFIVTAH APTTLKRGDVLAVDQRSNRISLLRDGQSRPYLDISSAYQAHLWDVAVNSDRSRVYVSMSGMRGPTASHVGVAGTSAVLEI DAQSGNLLRAFTAYDEVSGLPYQDQMLDLAGLVITPDDTQVLACDFNNWQGNGKVIAINLQTGTISVLADELDQPSTLSV DGPDHVLVANTRQPHGKASGGQIIRINTRTGTKEIVGEISGVDASLVGVVRLPDGSFAGTMSEGTQEKCMVFHMEAGSSQ HRIIWHPQPGFLGSGISVQDDTLWVAETLRGRAYQLDFNGNIKQFVQVYAGVDQDNLEFMFRGFDTLESVQVVA >Mature_393_residues TSSATEKALLEPADDVPVIRGLPNIQTNQYTISVLTADASSKALTTIQKQIVSAIHVHSLTQLPALHKVVDTMFIVTAHA PTTLKRGDVLAVDQRSNRISLLRDGQSRPYLDISSAYQAHLWDVAVNSDRSRVYVSMSGMRGPTASHVGVAGTSAVLEID AQSGNLLRAFTAYDEVSGLPYQDQMLDLAGLVITPDDTQVLACDFNNWQGNGKVIAINLQTGTISVLADELDQPSTLSVD GPDHVLVANTRQPHGKASGGQIIRINTRTGTKEIVGEISGVDASLVGVVRLPDGSFAGTMSEGTQEKCMVFHMEAGSSQH RIIWHPQPGFLGSGISVQDDTLWVAETLRGRAYQLDFNGNIKQFVQVYAGVDQDNLEFMFRGFDTLESVQVVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42484; Mature: 42353
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSATEKALLEPADDVPVIRGLPNIQTNQYTISVLTADASSKALTTIQKQIVSAIHVHS CCCCCCHHHHCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH LTQLPALHKVVDTMFIVTAHAPTTLKRGDVLAVDQRSNRISLLRDGQSRPYLDISSAYQA HHHHHHHHHHHHEEEEEEECCCCEECCCCEEEEECCCCEEEEEECCCCCCEEEECCCCEE HLWDVAVNSDRSRVYVSMSGMRGPTASHVGVAGTSAVLEIDAQSGNLLRAFTAYDEVSGL EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHHCCC PYQDQMLDLAGLVITPDDTQVLACDFNNWQGNGKVIAINLQTGTISVLADELDQPSTLSV CCHHHHHHEECEEECCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEHHCCCCCEEEE DGPDHVLVANTRQPHGKASGGQIIRINTRTGTKEIVGEISGVDASLVGVVRLPDGSFAGT CCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCC MSEGTQEKCMVFHMEAGSSQHRIIWHPQPGFLGSGISVQDDTLWVAETLRGRAYQLDFNG CCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCEECCCCEEEEHHHCCCEEEEECCC NIKQFVQVYAGVDQDNLEFMFRGFDTLESVQVVA CHHHHHHHHHCCCCCCCEEEEECCCCHHHEEEEC >Mature Secondary Structure TSSATEKALLEPADDVPVIRGLPNIQTNQYTISVLTADASSKALTTIQKQIVSAIHVHS CCCCCHHHHCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH LTQLPALHKVVDTMFIVTAHAPTTLKRGDVLAVDQRSNRISLLRDGQSRPYLDISSAYQA HHHHHHHHHHHHEEEEEEECCCCEECCCCEEEEECCCCEEEEEECCCCCCEEEECCCCEE HLWDVAVNSDRSRVYVSMSGMRGPTASHVGVAGTSAVLEIDAQSGNLLRAFTAYDEVSGL EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHHCCC PYQDQMLDLAGLVITPDDTQVLACDFNNWQGNGKVIAINLQTGTISVLADELDQPSTLSV CCHHHHHHEECEEECCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEHHCCCCCEEEE DGPDHVLVANTRQPHGKASGGQIIRINTRTGTKEIVGEISGVDASLVGVVRLPDGSFAGT CCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCC MSEGTQEKCMVFHMEAGSSQHRIIWHPQPGFLGSGISVQDDTLWVAETLRGRAYQLDFNG CCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCEECCCCEEEEHHHCCCEEEEECCC NIKQFVQVYAGVDQDNLEFMFRGFDTLESVQVVA CHHHHHHHHHCCCCCCCEEEEECCCCHHHEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA