| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897319
Identifier: 159897319
GI number: 159897319
Start: 892730
End: 893761
Strand: Direct
Name: 159897319
Synonym: Haur_0790
Alternate gene names: NA
Gene position: 892730-893761 (Clockwise)
Preceding gene: 159897318
Following gene: 159897321
Centisome position: 14.07
GC content: 51.74
Gene sequence:
>1032_bases ATGCGATTCGTGATTTGTGTTCTTGTTTGTATTCTCTTGTCAAGTTGTGGGGCGGCTAATTCGGCGACGGTAACCCCGCC AGCTGCGGTTGCCCCCAAGCTTGGCGATATTTCGCTGATTATCTCGCGGGGTGGGGATTTGTGGCGTTTCGATTTGCCCG CTAAACAGTGGACGCAATTAACCAACGAAGCGCCCAATGCCTACTCAACCTTCCCTAGTATTGCTCCCGATGGCAAAAGC GTGGTCTATTCGTATCGGCCACCTGTGCCAACTCCTAGTGCCGAGCAACCCTTTGTTGTGCCCGTTAATCATGCCAACCA AATTGCGGTTGATGGCGGAGCCAGTAAATCGTTGTTTGTGCCCGATGGCGGCAAGCGCGATGGTCTGCAAATTTACGATT CACTCGATACGCCAGTTTGGTCGCCTGATGGCAAAACCTTGTATGGGGTGTATCAAACCTTGCGTTTTGATAACGATGGG GTCTTTTTGCAATCAGGCAGCTCGATTGTAGCGATTGATCTTGCTAGTGGTGTGCAACAAACTCTCGTCATGACCGGAAC ATTTCCATCGGTGTCGCCTGATGGCCGCCAATTGGCCTTCGTGCGTACCCGCGACGGCATTTACCCAACCTTATACCTCT ACGATTTACAAACTAAGCAAGAGCGGGTGCTGTTTGATCAGCCCAACTTGGTGAGTGCCTTAGAAGCACCAATCTGGTCG GCGGATGGCAAAACAATTTATATCGCGGCCAGCCCTTTGACAATTGGCCAACATCAACCAAACTGGGTCGATTGGTTTGT CACGCCAGCATCTGCCCATGGTTTGGGCTGGCAAGTGTGGTCGGTTGATCTGGCGACAGGTCAAGGCAAGCCGGTCAATA GCGAAATCTTCGAAGATCCTCGGATCGTCGTTGATGGTTCGCTGTTGTATGTTTGGACGTTCTCAGGCCTTTGGCAGATG GATTTGGTCGGTAATCCTCCAGTTTTAATCGAAGAGCCAGGCGATATCGGCGGTATGACGCGGGTTCCCTAG
Upstream 100 bases:
>100_bases AGCTGGTTTCGAGCGAGTTGGCTTTATTCCACGAGCCTATATTGATCCGCGCAGTAATCAAGGCACTGATATAGCGCTGT ATCTCCGCGAGCGATAATTC
Downstream 100 bases:
>100_bases TTAGAGCGTAGAGCTTAGAACATAGAGACGATAGGCTAGGGTTTTACGCAGAGGCGCAGAGAGAGGGATGAAGGTAACAA ATCAGAAGGCAAAAGCCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MRFVICVLVCILLSSCGAANSATVTPPAAVAPKLGDISLIISRGGDLWRFDLPAKQWTQLTNEAPNAYSTFPSIAPDGKS VVYSYRPPVPTPSAEQPFVVPVNHANQIAVDGGASKSLFVPDGGKRDGLQIYDSLDTPVWSPDGKTLYGVYQTLRFDNDG VFLQSGSSIVAIDLASGVQQTLVMTGTFPSVSPDGRQLAFVRTRDGIYPTLYLYDLQTKQERVLFDQPNLVSALEAPIWS ADGKTIYIAASPLTIGQHQPNWVDWFVTPASAHGLGWQVWSVDLATGQGKPVNSEIFEDPRIVVDGSLLYVWTFSGLWQM DLVGNPPVLIEEPGDIGGMTRVP
Sequences:
>Translated_343_residues MRFVICVLVCILLSSCGAANSATVTPPAAVAPKLGDISLIISRGGDLWRFDLPAKQWTQLTNEAPNAYSTFPSIAPDGKS VVYSYRPPVPTPSAEQPFVVPVNHANQIAVDGGASKSLFVPDGGKRDGLQIYDSLDTPVWSPDGKTLYGVYQTLRFDNDG VFLQSGSSIVAIDLASGVQQTLVMTGTFPSVSPDGRQLAFVRTRDGIYPTLYLYDLQTKQERVLFDQPNLVSALEAPIWS ADGKTIYIAASPLTIGQHQPNWVDWFVTPASAHGLGWQVWSVDLATGQGKPVNSEIFEDPRIVVDGSLLYVWTFSGLWQM DLVGNPPVLIEEPGDIGGMTRVP >Mature_343_residues MRFVICVLVCILLSSCGAANSATVTPPAAVAPKLGDISLIISRGGDLWRFDLPAKQWTQLTNEAPNAYSTFPSIAPDGKS VVYSYRPPVPTPSAEQPFVVPVNHANQIAVDGGASKSLFVPDGGKRDGLQIYDSLDTPVWSPDGKTLYGVYQTLRFDNDG VFLQSGSSIVAIDLASGVQQTLVMTGTFPSVSPDGRQLAFVRTRDGIYPTLYLYDLQTKQERVLFDQPNLVSALEAPIWS ADGKTIYIAASPLTIGQHQPNWVDWFVTPASAHGLGWQVWSVDLATGQGKPVNSEIFEDPRIVVDGSLLYVWTFSGLWQM DLVGNPPVLIEEPGDIGGMTRVP
Specific function: Unknown
COG id: COG0823
COG function: function code U; Periplasmic component of the Tol biopolymer transport system
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37096; Mature: 37096
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFVICVLVCILLSSCGAANSATVTPPAAVAPKLGDISLIISRGGDLWRFDLPAKQWTQL CHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCEEEEEECCCCEEEEECCHHHHHHH TNEAPNAYSTFPSIAPDGKSVVYSYRPPVPTPSAEQPFVVPVNHANQIAVDGGASKSLFV HHCCCCCHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCEEEC PDGGKRDGLQIYDSLDTPVWSPDGKTLYGVYQTLRFDNDGVFLQSGSSIVAIDLASGVQQ CCCCCCCCEEEEECCCCCEECCCCCEEEEEEEEEEECCCCEEEECCCCEEEEEECCCCCE TLVMTGTFPSVSPDGRQLAFVRTRDGIYPTLYLYDLQTKQERVLFDQPNLVSALEAPIWS EEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEECCCCHHHHHCCCEEC ADGKTIYIAASPLTIGQHQPNWVDWFVTPASAHGLGWQVWSVDLATGQGKPVNSEIFEDP CCCCEEEEEECCEEECCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHCCC RIVVDGSLLYVWTFSGLWQMDLVGNPPVLIEEPGDIGGMTRVP EEEEECCEEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCC >Mature Secondary Structure MRFVICVLVCILLSSCGAANSATVTPPAAVAPKLGDISLIISRGGDLWRFDLPAKQWTQL CHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCEEEEEECCCCEEEEECCHHHHHHH TNEAPNAYSTFPSIAPDGKSVVYSYRPPVPTPSAEQPFVVPVNHANQIAVDGGASKSLFV HHCCCCCHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCEEEC PDGGKRDGLQIYDSLDTPVWSPDGKTLYGVYQTLRFDNDGVFLQSGSSIVAIDLASGVQQ CCCCCCCCEEEEECCCCCEECCCCCEEEEEEEEEEECCCCEEEECCCCEEEEEECCCCCE TLVMTGTFPSVSPDGRQLAFVRTRDGIYPTLYLYDLQTKQERVLFDQPNLVSALEAPIWS EEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEECCCCHHHHHCCCEEC ADGKTIYIAASPLTIGQHQPNWVDWFVTPASAHGLGWQVWSVDLATGQGKPVNSEIFEDP CCCCEEEEEECCEEECCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHCCC RIVVDGSLLYVWTFSGLWQMDLVGNPPVLIEEPGDIGGMTRVP EEEEECCEEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA