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The map label for this gene is jag [H]

Identifier: 159897292

GI number: 159897292

Start: 866450

End: 867172

Strand: Reverse

Name: jag [H]

Synonym: Haur_0763

Alternate gene names: 159897292

Gene position: 867172-866450 (Counterclockwise)

Preceding gene: 159897293

Following gene: 159897291

Centisome position: 13.66

GC content: 54.22

Gene sequence:

>723_bases
ATGGCGTTGCAAAAAGTTGAAGTACGCGCAGCAAGCGTGGCCGAGGCCGTGGCTCAAGCCCTCGCCCAACTCGGCAAAGA
TGAAGATGAAGCTCTGATCGAGGTTTTAGCGCAAACCGCTGATTCAGCCCTTGTCCGCGTCAGCGTCGATGATGATGAGG
ATGAGTTGCTCGCTGAATATGGCGATGAGGACGATGAGGAGCAACCCAAACGTCGTCGCCGCCGTGTAGCCAGCACCGAT
GAGCAAACTGTGGCGCTCGCTCGCCAGTTGCTCGAGGCGTTGCTCACCCGCATGAACATCGATGCCTTTGTAACGCCAGT
TGTACAGAAGGCTAAAGGCTCCGATGATGAAGAAGATACGCTAACCTTGCATATCGAGGGTGTCGATGAAGAAACCACGG
GCCTGATGATTGGCCGCCGTGGCGAAACCTTGCGCTCATTGCAATATCTGCTAAATGTCTTGATTCATCGCCAAACTGGG
CGCTGGTCGCAAGTGGTGATCGATATTGGCCAATATCGCCAACGTCGCCAAGATTCGCTTGAGGGCTTGGCGCTGCGCAT
GGCTGAACGGGTGCGCCAATCAGGTCGCCCAATGCCACTTGAGCCAATGAGTTCATTCGAGCGCCGCATCATTCATATGG
CGCTGCGCGACGATCCGTCAGTCTATACCGAAAGTGCTGGCGAAGGTGAGCATCGAAAAATTGTTATTTATCCAAAACGC
TAA

Upstream 100 bases:

>100_bases
CATCGCAGCCGAACAAGCAATTGAAGATGTTAAGGCGCAGCTTGGCAAGCCGAAAAAACGGCGCTAGTCTCGGCTTATAA
TTCGGAGGAACGTGTAGGAC

Downstream 100 bases:

>100_bases
TCAATGGCGATTAGCGCTCGTGTTCAGCGGGTGTTGTACTCCAACGCCCGCTAGCACATAGCCAAGGAGTCGATGATGAT
TCCCTTAACTAACCTGCCCA

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MALQKVEVRAASVAEAVAQALAQLGKDEDEALIEVLAQTADSALVRVSVDDDEDELLAEYGDEDDEEQPKRRRRRVASTD
EQTVALARQLLEALLTRMNIDAFVTPVVQKAKGSDDEEDTLTLHIEGVDEETTGLMIGRRGETLRSLQYLLNVLIHRQTG
RWSQVVIDIGQYRQRRQDSLEGLALRMAERVRQSGRPMPLEPMSSFERRIIHMALRDDPSVYTESAGEGEHRKIVIYPKR

Sequences:

>Translated_240_residues
MALQKVEVRAASVAEAVAQALAQLGKDEDEALIEVLAQTADSALVRVSVDDDEDELLAEYGDEDDEEQPKRRRRRVASTD
EQTVALARQLLEALLTRMNIDAFVTPVVQKAKGSDDEEDTLTLHIEGVDEETTGLMIGRRGETLRSLQYLLNVLIHRQTG
RWSQVVIDIGQYRQRRQDSLEGLALRMAERVRQSGRPMPLEPMSSFERRIIHMALRDDPSVYTESAGEGEHRKIVIYPKR
>Mature_239_residues
ALQKVEVRAASVAEAVAQALAQLGKDEDEALIEVLAQTADSALVRVSVDDDEDELLAEYGDEDDEEQPKRRRRRVASTDE
QTVALARQLLEALLTRMNIDAFVTPVVQKAKGSDDEEDTLTLHIEGVDEETTGLMIGRRGETLRSLQYLLNVLIHRQTGR
WSQVVIDIGQYRQRRQDSLEGLALRMAERVRQSGRPMPLEPMSSFERRIIHMALRDDPSVYTESAGEGEHRKIVIYPKR

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 27120; Mature: 26989

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALQKVEVRAASVAEAVAQALAQLGKDEDEALIEVLAQTADSALVRVSVDDDEDELLAEY
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHC
GDEDDEEQPKRRRRRVASTDEQTVALARQLLEALLTRMNIDAFVTPVVQKAKGSDDEEDT
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCE
LTLHIEGVDEETTGLMIGRRGETLRSLQYLLNVLIHRQTGRWSQVVIDIGQYRQRRQDSL
EEEEEECCCCCHHCEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
EGLALRMAERVRQSGRPMPLEPMSSFERRIIHMALRDDPSVYTESAGEGEHRKIVIYPKR
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
ALQKVEVRAASVAEAVAQALAQLGKDEDEALIEVLAQTADSALVRVSVDDDEDELLAEY
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHC
GDEDDEEQPKRRRRRVASTDEQTVALARQLLEALLTRMNIDAFVTPVVQKAKGSDDEEDT
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCE
LTLHIEGVDEETTGLMIGRRGETLRSLQYLLNVLIHRQTGRWSQVVIDIGQYRQRRQDSL
EEEEEECCCCCHHCEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
EGLALRMAERVRQSGRPMPLEPMSSFERRIIHMALRDDPSVYTESAGEGEHRKIVIYPKR
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]