Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

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The map label for this gene is vdlC [H]

Identifier: 159897244

GI number: 159897244

Start: 821299

End: 822108

Strand: Reverse

Name: vdlC [H]

Synonym: Haur_0715

Alternate gene names: 159897244

Gene position: 822108-821299 (Counterclockwise)

Preceding gene: 159897245

Following gene: 159897243

Centisome position: 12.95

GC content: 55.68

Gene sequence:

>810_bases
ATGACATCGCAACAAAAGGTCGTGCTCATCACAGGCGCATCATCGGGGATTGGGCAAGCAACAGCGGAACTGCTAGCAGC
CCATGGCTTTCGGGTCTTCGGCACGAGCCGCAACCCGATTTCGAACAAGCACTCATTTACTTGGCTACCGCTGGATGTCC
GCTCGGACGACTCGGTGCATGCCGCAGTTCAATCGCTGCTAGGCCAGACTGGACGACTTGACATCCTCATCAATAATGCA
GGTTATGTGCAGTTTGGTGCGGTTGAGGAGAGTAGCATTGCCGATGCGCAAGCTCAGTTCGACACCAATCTGTTCGGTGT
TATTCGCATGATCAAGGCGGTAATGCCGATTATGCGACAACAAGGCAGCGGACGCATTATCAATGTTAGCTCAATTGTCG
GGCACATCGCGCCTCCATATGGTGGCCTGTATAGTGCGAGCAAATTTGCCCTAGAAGGCCTGAGCGAATCTCTTAGCGCC
GAGGTTCGGCAGTTTGGCGTGAGCGTCTCACTAGTCGAGCCAAGCTATGTGAATACCCCGATTGTCACCCAGCCGCCGAC
TACCCTGATTAATGACTATACCCTTGGTCGTCAGCGTGCGCAGCAAAGCCTCGCCACAAATGCTAAGCAGGGGCTGGAGC
CTGGCACGGTGGCTCGCGTAATCCTGCAGGCCGCAACTAGCAAACCCCGTCTGCGCTATCCCGTTGGCGTGGATGGAACC
ATCGCCCTGATGCTCCAGCGTGTGCTCCCCGAAGCAGTATTTGAGGCATTCAAACGCCGTCTGTTCAGCGGTGACAAGAC
CGCTGCCTAG

Upstream 100 bases:

>100_bases
ACGATATCGTGAAAACAGCTTTATCGATTTTCAACTAAATTTTTTTGACTTCATGTTTGAACGATTATTCAAACATAACC
ATTCGTAAAGGAACAGATTA

Downstream 100 bases:

>100_bases
GCTCGTGAACTGCGAACGGCAGCACGCTGATAGGAAACGAAATTCCCATCAGCAGCACCAAATACAACAATAGGAGCAAC
ACATTATGATGAAAGCCTTC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTSQQKVVLITGASSGIGQATAELLAAHGFRVFGTSRNPISNKHSFTWLPLDVRSDDSVHAAVQSLLGQTGRLDILINNA
GYVQFGAVEESSIADAQAQFDTNLFGVIRMIKAVMPIMRQQGSGRIINVSSIVGHIAPPYGGLYSASKFALEGLSESLSA
EVRQFGVSVSLVEPSYVNTPIVTQPPTTLINDYTLGRQRAQQSLATNAKQGLEPGTVARVILQAATSKPRLRYPVGVDGT
IALMLQRVLPEAVFEAFKRRLFSGDKTAA

Sequences:

>Translated_269_residues
MTSQQKVVLITGASSGIGQATAELLAAHGFRVFGTSRNPISNKHSFTWLPLDVRSDDSVHAAVQSLLGQTGRLDILINNA
GYVQFGAVEESSIADAQAQFDTNLFGVIRMIKAVMPIMRQQGSGRIINVSSIVGHIAPPYGGLYSASKFALEGLSESLSA
EVRQFGVSVSLVEPSYVNTPIVTQPPTTLINDYTLGRQRAQQSLATNAKQGLEPGTVARVILQAATSKPRLRYPVGVDGT
IALMLQRVLPEAVFEAFKRRLFSGDKTAA
>Mature_268_residues
TSQQKVVLITGASSGIGQATAELLAAHGFRVFGTSRNPISNKHSFTWLPLDVRSDDSVHAAVQSLLGQTGRLDILINNAG
YVQFGAVEESSIADAQAQFDTNLFGVIRMIKAVMPIMRQQGSGRIINVSSIVGHIAPPYGGLYSASKFALEGLSESLSAE
VRQFGVSVSLVEPSYVNTPIVTQPPTTLINDYTLGRQRAQQSLATNAKQGLEPGTVARVILQAATSKPRLRYPVGVDGTI
ALMLQRVLPEAVFEAFKRRLFSGDKTAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=199, Percent_Identity=39.1959798994975, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI223718074, Length=254, Percent_Identity=35.8267716535433, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI20149619, Length=273, Percent_Identity=26.3736263736264, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI19743808, Length=279, Percent_Identity=31.5412186379928, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI40254992, Length=201, Percent_Identity=33.8308457711443, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI150247226, Length=293, Percent_Identity=28.6689419795222, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI142976729, Length=274, Percent_Identity=24.8175182481752, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI44680136, Length=184, Percent_Identity=34.2391304347826, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI44680133, Length=184, Percent_Identity=34.2391304347826, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI17738292, Length=184, Percent_Identity=34.2391304347826, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=32.9842931937173, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI157739938, Length=191, Percent_Identity=31.9371727748691, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI40548397, Length=185, Percent_Identity=31.8918918918919, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI214010158, Length=185, Percent_Identity=31.8918918918919, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI214010156, Length=185, Percent_Identity=31.8918918918919, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI22758144, Length=185, Percent_Identity=31.8918918918919, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI50726952, Length=283, Percent_Identity=29.6819787985866, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI22507405, Length=275, Percent_Identity=29.0909090909091, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI210032110, Length=263, Percent_Identity=26.2357414448669, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI4503817, Length=188, Percent_Identity=29.2553191489362, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI119392083, Length=188, Percent_Identity=29.7872340425532, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI4504503, Length=293, Percent_Identity=26.962457337884, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI210032112, Length=250, Percent_Identity=26.4, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI109715829, Length=194, Percent_Identity=27.319587628866, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=202, Percent_Identity=31.6831683168317, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI186928839, Length=241, Percent_Identity=27.8008298755187, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4758504, Length=204, Percent_Identity=28.4313725490196, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI59889578, Length=132, Percent_Identity=31.0606060606061, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7705855, Length=228, Percent_Identity=28.5087719298246, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI31542939, Length=199, Percent_Identity=29.1457286432161, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1786701, Length=256, Percent_Identity=34.765625, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=37.0967741935484, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=35.1063829787234, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786812, Length=176, Percent_Identity=33.5227272727273, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082160, Length=185, Percent_Identity=28.1081081081081, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=29.0502793296089, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788459, Length=188, Percent_Identity=28.7234042553192, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789208, Length=188, Percent_Identity=28.7234042553192, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=193, Percent_Identity=31.6062176165803, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17507613, Length=280, Percent_Identity=27.8571428571429, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI32563809, Length=280, Percent_Identity=27.8571428571429, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17570069, Length=239, Percent_Identity=30.5439330543933, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17557780, Length=288, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71997402, Length=257, Percent_Identity=29.5719844357977, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=203, Percent_Identity=31.5270935960591, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=182, Percent_Identity=31.8681318681319, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=192, Percent_Identity=32.8125, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17567345, Length=194, Percent_Identity=27.8350515463918, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=193, Percent_Identity=31.6062176165803, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=221, Percent_Identity=31.6742081447964, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=194, Percent_Identity=34.020618556701, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=196, Percent_Identity=31.6326530612245, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=195, Percent_Identity=31.7948717948718, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=27.979274611399, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=33.1632653061224, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=244, Percent_Identity=30.327868852459, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=190, Percent_Identity=35.2631578947368, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=193, Percent_Identity=32.1243523316062, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=205, Percent_Identity=31.219512195122, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=197, Percent_Identity=30.4568527918782, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=34.010152284264, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=32.8282828282828, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=196, Percent_Identity=30.1020408163265, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193210355, Length=288, Percent_Identity=26.7361111111111, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=203, Percent_Identity=30.0492610837438, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=203, Percent_Identity=30.0492610837438, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=197, Percent_Identity=25.8883248730964, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=28.6458333333333, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=190, Percent_Identity=27.8947368421053, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=244, Percent_Identity=31.5573770491803, Blast_Score=100, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=220, Percent_Identity=28.6363636363636, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=30.4123711340206, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21358495, Length=269, Percent_Identity=30.4832713754647, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24651139, Length=188, Percent_Identity=35.1063829787234, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI23397609, Length=189, Percent_Identity=38.0952380952381, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=32.994923857868, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI28571526, Length=189, Percent_Identity=31.7460317460317, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21356301, Length=234, Percent_Identity=28.6324786324786, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24641232, Length=223, Percent_Identity=29.1479820627803, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=32.6086956521739, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643142, Length=185, Percent_Identity=34.0540540540541, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24639444, Length=195, Percent_Identity=31.2820512820513, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI21357041, Length=189, Percent_Identity=29.1005291005291, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=32.6633165829146, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24641388, Length=214, Percent_Identity=29.9065420560748, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=30.3482587064677, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281364892, Length=195, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI281364494, Length=251, Percent_Identity=26.2948207171315, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24644339, Length=185, Percent_Identity=32.4324324324324, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24663911, Length=209, Percent_Identity=26.7942583732057, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17737361, Length=261, Percent_Identity=27.2030651340996, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24648693, Length=197, Percent_Identity=28.9340101522843, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355889, Length=197, Percent_Identity=28.9340101522843, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581726, Length=164, Percent_Identity=27.4390243902439, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI116007234, Length=200, Percent_Identity=31, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45554248, Length=203, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24640117, Length=203, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI116007232, Length=187, Percent_Identity=31.0160427807487, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355631, Length=276, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28784; Mature: 28653

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTSQQKVVLITGASSGIGQATAELLAAHGFRVFGTSRNPISNKHSFTWLPLDVRSDDSVH
CCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEECCCCCHHH
AAVQSLLGQTGRLDILINNAGYVQFGAVEESSIADAQAQFDTNLFGVIRMIKAVMPIMRQ
HHHHHHHCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
QGSGRIINVSSIVGHIAPPYGGLYSASKFALEGLSESLSAEVRQFGVSVSLVEPSYVNTP
CCCCCEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
IVTQPPTTLINDYTLGRQRAQQSLATNAKQGLEPGTVARVILQAATSKPRLRYPVGVDGT
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCHH
IALMLQRVLPEAVFEAFKRRLFSGDKTAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TSQQKVVLITGASSGIGQATAELLAAHGFRVFGTSRNPISNKHSFTWLPLDVRSDDSVH
CCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEECCCCCHHH
AAVQSLLGQTGRLDILINNAGYVQFGAVEESSIADAQAQFDTNLFGVIRMIKAVMPIMRQ
HHHHHHHCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
QGSGRIINVSSIVGHIAPPYGGLYSASKFALEGLSESLSAEVRQFGVSVSLVEPSYVNTP
CCCCCEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
IVTQPPTTLINDYTLGRQRAQQSLATNAKQGLEPGTVARVILQAATSKPRLRYPVGVDGT
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCHH
IALMLQRVLPEAVFEAFKRRLFSGDKTAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]