| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897226
Identifier: 159897226
GI number: 159897226
Start: 800286
End: 801167
Strand: Reverse
Name: 159897226
Synonym: Haur_0697
Alternate gene names: NA
Gene position: 801167-800286 (Counterclockwise)
Preceding gene: 159897227
Following gene: 159897225
Centisome position: 12.62
GC content: 46.6
Gene sequence:
>882_bases ATGACTACTAAACTCGTTTTTGTGCATGCGCTTTCACCACTTCATGCTGGCACTGGCCAAGGCGCTGGAGTTATCGATTT GCCGATTGCTCGCGAAAAGGCCACTAATTTGCCCTATTTGCCTGGCTCATCGCTCAAAGGCCCGTTGCGCGATGGCTACA CTGGCGCTCGTAAAGATGAAATCTTTGGAACTGCATCAGATAACGCCACTGGTAATGCAGGTTTTGTTCAATTTTCCGAT CTGCGCTTGTTGTGCATGCCAGTGCGTAGCTTGTATGGCACCTTCGCATGGGTCACTTCGCCGTATATTCTCAATCGCCT TGCCCGCGAAATCAAAAATCTTTTTACTGAAAACACCCCACCAAGCTGGATCGAAAACCCTGATGTGGATCAATGTTTTG TCGTTGCTGGATCAGCACTTAAATCAAACTTACCAAAATCAGCAAAGCGCAAGGATATTTATCTAGAGGATTTAGATTTT GAATCTCAAGCGGATCAAGCTGAGCTAGTAACCCAATGGGCTGATTGGCTGAAAAAACGTATTTTTGGCGATTCACCAGA GTGGCAAACGATGTTTGTTGAGCGTTTCTGCATCGTCAATGATGATGTATTTAGTTTCCTTTTGAATACTGCCACCGAAA TAACCGCCCGCATTCGGCTCAACGATGAGACCAAAACAGTTGCTGATGGTCAACTTTGGTATGAAGAAGCTTTGCCAGCC GAATCGATTTTGGCTGGCTTGATGTTGATTGCCCCGCCAGCCTCAAAAACAGACTTAATTCAAAGCATTACGACTGAGCT ACCACGCCTGTGGCAAAAACCAATTCAGCTTGGAGGCAAGGCCACCGTCGGGCGCGGAATTTGTCGCGTGATTGTGAAAT AG
Upstream 100 bases:
>100_bases TCAAGCAAATTGAAGCTAATAAAGCGTCAGGTTCACTACTGAATCAAGGAACCGATATTCTTAAAGCATTTTTAGCCTAT CTTGCGAAGGAGCTACGATA
Downstream 100 bases:
>100_bases GAGCAGTAGCATGAGTAATTCAGTCTTTCAAACTCGTGATCAACAATATGCTGCTTCAGCGTATGCTCATATTGAAGAAG TTCTAGAAAAATATCCAAAG
Product: CRISPR-associated RAMP Cmr4 family protein
Products: NA
Alternate protein names: CRISPR-Associated RAMP Cmr4 Family Protein Family Protein; Cmr4 Family CRISPR-Associated RAMP Protein; CRISPR-Associated RAMP Cmr4 Family Protein; CRISPR-Associated Ramp Protein Cmr4 Family; Crispr-Associated Ramp Protein Cmr4 Family; CRISPR-Associated RAMP Protein
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MTTKLVFVHALSPLHAGTGQGAGVIDLPIAREKATNLPYLPGSSLKGPLRDGYTGARKDEIFGTASDNATGNAGFVQFSD LRLLCMPVRSLYGTFAWVTSPYILNRLAREIKNLFTENTPPSWIENPDVDQCFVVAGSALKSNLPKSAKRKDIYLEDLDF ESQADQAELVTQWADWLKKRIFGDSPEWQTMFVERFCIVNDDVFSFLLNTATEITARIRLNDETKTVADGQLWYEEALPA ESILAGLMLIAPPASKTDLIQSITTELPRLWQKPIQLGGKATVGRGICRVIVK
Sequences:
>Translated_293_residues MTTKLVFVHALSPLHAGTGQGAGVIDLPIAREKATNLPYLPGSSLKGPLRDGYTGARKDEIFGTASDNATGNAGFVQFSD LRLLCMPVRSLYGTFAWVTSPYILNRLAREIKNLFTENTPPSWIENPDVDQCFVVAGSALKSNLPKSAKRKDIYLEDLDF ESQADQAELVTQWADWLKKRIFGDSPEWQTMFVERFCIVNDDVFSFLLNTATEITARIRLNDETKTVADGQLWYEEALPA ESILAGLMLIAPPASKTDLIQSITTELPRLWQKPIQLGGKATVGRGICRVIVK >Mature_292_residues TTKLVFVHALSPLHAGTGQGAGVIDLPIAREKATNLPYLPGSSLKGPLRDGYTGARKDEIFGTASDNATGNAGFVQFSDL RLLCMPVRSLYGTFAWVTSPYILNRLAREIKNLFTENTPPSWIENPDVDQCFVVAGSALKSNLPKSAKRKDIYLEDLDFE SQADQAELVTQWADWLKKRIFGDSPEWQTMFVERFCIVNDDVFSFLLNTATEITARIRLNDETKTVADGQLWYEEALPAE SILAGLMLIAPPASKTDLIQSITTELPRLWQKPIQLGGKATVGRGICRVIVK
Specific function: Unknown
COG id: COG1336
COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32422; Mature: 32291
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTKLVFVHALSPLHAGTGQGAGVIDLPIAREKATNLPYLPGSSLKGPLRDGYTGARKDE CCCEEEEEEECCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC IFGTASDNATGNAGFVQFSDLRLLCMPVRSLYGTFAWVTSPYILNRLAREIKNLFTENTP CEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PSWIENPDVDQCFVVAGSALKSNLPKSAKRKDIYLEDLDFESQADQAELVTQWADWLKKR CCCCCCCCCCHHHEEECHHHHHCCCCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHH IFGDSPEWQTMFVERFCIVNDDVFSFLLNTATEITARIRLNDETKTVADGQLWYEEALPA HCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCEEECCHHHHHHCCCH ESILAGLMLIAPPASKTDLIQSITTELPRLWQKPIQLGGKATVGRGICRVIVK HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure TTKLVFVHALSPLHAGTGQGAGVIDLPIAREKATNLPYLPGSSLKGPLRDGYTGARKDE CCEEEEEEECCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC IFGTASDNATGNAGFVQFSDLRLLCMPVRSLYGTFAWVTSPYILNRLAREIKNLFTENTP CEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PSWIENPDVDQCFVVAGSALKSNLPKSAKRKDIYLEDLDFESQADQAELVTQWADWLKKR CCCCCCCCCCHHHEEECHHHHHCCCCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHH IFGDSPEWQTMFVERFCIVNDDVFSFLLNTATEITARIRLNDETKTVADGQLWYEEALPA HCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCEEECCHHHHHHCCCH ESILAGLMLIAPPASKTDLIQSITTELPRLWQKPIQLGGKATVGRGICRVIVK HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA